DomainAssembly.hh

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//
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// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
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/// @file protocols/abinitio/DomainAssembly.hh
/// @author Sarel Fleishman (sarelf@u.washington.edu), Jacob Corn (jecorn@u.washington.edu)

#ifndef INCLUDED_protocols_abinitio_DomainAssembly_hh
#define INCLUDED_protocols_abinitio_DomainAssembly_hh

#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <utility/tag/Tag.fwd.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/DataMap.fwd.hh>
#include <core/fragment/FragSet.fwd.hh>

#include <utility/vector1.hh>


namespace protocols {
namespace abinitio {

/// @brief insert fragments in a linker region. Very similar to what's in looprelax_main
class DomainAssembly : public protocols::moves::Mover
{
typedef core::fragment::FragSetOP FragSetOP;
typedef core::fragment::FragSetCOP FragSetCOP;
public:
  DomainAssembly();
  DomainAssembly(
    core::Size const linker_start,
    core::Size const linker_end,
    FragSetOP fragset_large,
    FragSetOP fragset_small
  );
  virtual ~DomainAssembly();
  protocols::moves::MoverOP clone() const;
  protocols::moves::MoverOP fresh_instance() const;
  void apply( core::pose::Pose & pose );
  virtual std::string get_name() const;
  void parse_my_tag(
    utility::tag::TagPtr const tag,
    protocols::moves::DataMap &,
    protocols::filters::Filters_map const &,
    protocols::moves::Movers_map const &,
    core::pose::Pose const &
  );
private:
  core::Size linker_start_, linker_end_;
  core::fragment::FragSetOP fragset_large_, fragset_small_;
  bool fragments_set_;
};

} // abinitio
} // protocols


#endif /*INCLUDED_abinitio_movers_DomainAssembly_HH*/