protocols::fldsgn Namespace Reference

Namespaces
	filters
	potentials
	topology

Classes
class	BluePrintBDR
class	BluePrintBDRCreator
class	CircularPermutation
class	CircularPermutationCreator
class	MatchResidues
class	MatchResiduesMover
class	MatchResiduesMoverCreator
class	MyAtom
class	NcontactsCalculator
class	SheetConstraintsRCG
class	SheetCstGeneratorCreator

Typedefs
typedef utility::pointer::owning_ptr < BluePrintBDR >	BluePrintBDR_OP
	BluePrintBDR owning pointer. More...
typedef utility::pointer::owning_ptr < BluePrintBDR const >	BluePrintBDR_COP
	BluePrintBDR const owning pointer. More...
typedef utility::pointer::access_ptr < BluePrintBDR >	BluePrintBDR_AP
	BluePrintBDR access pointer. More...
typedef utility::pointer::access_ptr < BluePrintBDR const >	BluePrintBDR_CAP
	BluePrintBDR const access pointer. More...
typedef utility::pointer::owning_ptr < CircularPermutation >	CircularPermutation_OP
	CircularPermutation owning pointer. More...
typedef utility::pointer::owning_ptr < CircularPermutation const >	CircularPermutation_COP
	CircularPermutation const owning pointer. More...
typedef utility::pointer::access_ptr < CircularPermutation >	CircularPermutation_AP
	CircularPermutation access pointer. More...
typedef utility::pointer::access_ptr < CircularPermutation const >	CircularPermutation_CAP
	CircularPermutation const access pointer. More...
typedef utility::vector1 < core::Size >	VecSize
typedef utility::vector1< VecSize >	VecVecSize
typedef utility::pointer::owning_ptr < MatchResiduesMover >	MatchResiduesMoverOP
typedef utility::pointer::owning_ptr < MatchResiduesMover const >	MatchResiduesMoverCOP
typedef utility::pointer::owning_ptr < SetAACompositionPotential >	SetAACompositionPotential_OP
	SetAACompositionPotential owning pointer. More...
typedef utility::pointer::owning_ptr < SetAACompositionPotential const >	SetAACompositionPotential_COP
	SetAACompositionPotential const owning pointer. More...
typedef utility::pointer::access_ptr < SetAACompositionPotential >	SetAACompositionPotential_AP
	SetAACompositionPotential access pointer. More...
typedef utility::pointer::access_ptr < SetAACompositionPotential const >	SetAACompositionPotential_CAP
	SetAACompositionPotential const access pointer. More...
typedef utility::pointer::owning_ptr < SheetConstraintsRCG >	SheetConstraintsRCGOP

Functions
static basic::Tracer	TR ("protocols.fldsgn.BluePrintBDR")
static basic::Tracer	TR ("protocols.fldsgn.CircularPermutation")

Typedef Documentation

typedef utility::pointer::access_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_AP

BluePrintBDR access pointer.

Definition at line 38 of file BluePrintBDR.fwd.hh.

typedef utility::pointer::access_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_CAP

BluePrintBDR const access pointer.

Definition at line 42 of file BluePrintBDR.fwd.hh.

typedef utility::pointer::owning_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_COP

BluePrintBDR const owning pointer.

Definition at line 34 of file BluePrintBDR.fwd.hh.

typedef utility::pointer::owning_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_OP

BluePrintBDR owning pointer.

Definition at line 26 of file BluePrintBDR.fwd.hh.

typedef utility::pointer::access_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_AP

CircularPermutation access pointer.

Definition at line 38 of file CircularPermutation.fwd.hh.

typedef utility::pointer::access_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_CAP

CircularPermutation const access pointer.

Definition at line 42 of file CircularPermutation.fwd.hh.

typedef utility::pointer::owning_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_COP

CircularPermutation const owning pointer.

Definition at line 34 of file CircularPermutation.fwd.hh.

typedef utility::pointer::owning_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_OP

CircularPermutation owning pointer.

Definition at line 26 of file CircularPermutation.fwd.hh.

typedef utility::pointer::owning_ptr< MatchResiduesMover const > protocols::fldsgn::MatchResiduesMoverCOP

Definition at line 30 of file MatchResiduesMover.fwd.hh.

typedef utility::pointer::owning_ptr< MatchResiduesMover > protocols::fldsgn::MatchResiduesMoverOP

Definition at line 26 of file MatchResiduesMover.fwd.hh.

typedef utility::pointer::access_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_AP

SetAACompositionPotential access pointer.

Definition at line 38 of file SetAACompositionPotential.fwd.hh.

typedef utility::pointer::access_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_CAP

SetAACompositionPotential const access pointer.

Definition at line 42 of file SetAACompositionPotential.fwd.hh.

typedef utility::pointer::owning_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_COP

SetAACompositionPotential const owning pointer.

Definition at line 34 of file SetAACompositionPotential.fwd.hh.

typedef utility::pointer::owning_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_OP

SetAACompositionPotential owning pointer.

Definition at line 26 of file SetAACompositionPotential.fwd.hh.

typedef utility::pointer::owning_ptr< SheetConstraintsRCG > protocols::fldsgn::SheetConstraintsRCGOP

Definition at line 24 of file SheetConstraintsRCG.fwd.hh.

typedef utility::vector1< core::Size > protocols::fldsgn::VecSize

Definition at line 56 of file MatchResidues.cc.

typedef utility::vector1< VecSize > protocols::fldsgn::VecVecSize

Definition at line 57 of file MatchResidues.cc.

Function Documentation

static basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.CircularPermutation"  )

static

static basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.BluePrintBDR"  )

static

Referenced by protocols::fldsgn::filters::HelixKinkFilter::apply(), protocols::fldsgn::CircularPermutation::apply(), protocols::fldsgn::filters::HelixPairingFilter::apply(), protocols::fldsgn::filters::HSSTripletFilter::apply(), protocols::fldsgn::topology::BetaAlphaBetaMotif::calc_helix_cycle(), protocols::fldsgn::MatchResidues::compute(), protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::compute(), protocols::fldsgn::filters::HelixPairingFilter::compute(), protocols::fldsgn::SheetConstraintsRCG::generate_remodel_constraints(), protocols::fldsgn::topology::SheetSet::initialize(), protocols::fldsgn::MatchResidues::parse_my_tag(), protocols::fldsgn::filters::HelixPairingFilter::parse_my_tag(), protocols::fldsgn::filters::HSSTripletFilter::parse_my_tag(), protocols::fldsgn::topology::HSSTripletSet::push_back(), protocols::fldsgn::topology::StrandPairing::redefine_begin_end(), and protocols::fldsgn::topology::BetaAlphaBetaMotifSet::set_babmotifs().