core::import_pose::pose_stream Namespace Reference

Classes
class	ExtendedPoseInputStream
class	LazySilentFilePoseInputStream
class	MetaPoseInputStream
class	PDBPoseInputStream
class	PoseInputStream
class	PoseOutputStream
class	SilentFilePoseInputStream

Typedefs
typedef std::string	string
typedef utility::file::FileName	FileName
typedef utility::pointer::owning_ptr < LazySilentFilePoseInputStream >	LazySilentFilePoseInputStreamOP
typedef utility::pointer::owning_ptr < PDBPoseInputStream >	PDBPoseInputStreamOP
typedef utility::pointer::owning_ptr < PoseInputStream >	PoseInputStreamOP
typedef utility::pointer::owning_ptr < SilentFilePoseInputStream >	SilentFilePoseInputStreamOP

Functions
static basic::Tracer	tr ("core.io.pose_stream")
static basic::Tracer	tr ("core.io.pose_stream")
utility::vector1 < utility::file::FileName >	filenames_from_list_file (utility::vector1< utility::file::FileName > const &list_fns)
MetaPoseInputStream	streams_from_cmd_line ()

Typedef Documentation

typedef utility::file::FileName core::import_pose::pose_stream::FileName

Definition at line 54 of file LazySilentFilePoseInputStream.cc.

typedef utility::pointer::owning_ptr< LazySilentFilePoseInputStream > core::import_pose::pose_stream::LazySilentFilePoseInputStreamOP

Definition at line 23 of file LazySilentFilePoseInputStream.fwd.hh.

typedef utility::pointer::owning_ptr< PDBPoseInputStream > core::import_pose::pose_stream::PDBPoseInputStreamOP

Definition at line 23 of file PDBPoseInputStream.fwd.hh.

typedef utility::pointer::owning_ptr< PoseInputStream > core::import_pose::pose_stream::PoseInputStreamOP

Definition at line 23 of file PoseInputStream.fwd.hh.

typedef utility::pointer::owning_ptr< SilentFilePoseInputStream > core::import_pose::pose_stream::SilentFilePoseInputStreamOP

Definition at line 23 of file SilentFilePoseInputStream.fwd.hh.

typedef std::string core::import_pose::pose_stream::string

Definition at line 53 of file LazySilentFilePoseInputStream.cc.

Function Documentation

utility::vector1< utility::file::FileName > core::import_pose::pose_stream::filenames_from_list_file

(

utility::vector1< utility::file::FileName > const &

list_fns)

Definition at line 45 of file util.cc.

References protocols::abinitio::filename().

Referenced by streams_from_cmd_line().

MetaPoseInputStream core::import_pose::pose_stream::streams_from_cmd_line

(

)

Definition at line 74 of file util.cc.

References core::sequence::end, filenames_from_list_file(), and core::sequence::read_fasta_file().

Referenced by protocols::loophash::LoopHashLibrary::create_db(), protocols::jd2::PoseInputStreamJobInputter::fill_jobs(), protocols::wum::MPI_Relax::init_master(), protocols::loophash::MPI_LoopHashRefine::load_structures_from_cmdline_into_library(), protocols::jobdist::not_universal_main(), and protocols::wum::SilentStructStore::read_from_cmd_line().

static basic::Tracer core::import_pose::pose_stream::tr ( "core.io.pose_stream"  )

static

static basic::Tracer core::import_pose::pose_stream::tr ( "core.io.pose_stream"  )

static

Referenced by core::import_pose::pose_stream::LazySilentFilePoseInputStream::fill_pose(), core::import_pose::pose_stream::SilentFilePoseInputStream::fill_pose(), core::import_pose::pose_stream::SilentFilePoseInputStream::read_all_files_(), and core::import_pose::pose_stream::SilentFilePoseInputStream::set_silent_file_data().