protocols::symmetric_docking Namespace Reference

Classes
class	SymDockBaseProtocol
class	SymDockingHiRes
class	SymDockingLowRes
class	SymDockProtocol
class	SymFoldandDockMoveRbJumpMover
class	SymFoldandDockRbTrialMover
class	SymFoldandDockSlideTrialMover
class	SymRestrictTaskForDocking
class	SymSidechainMinMover
class	SymInterfaceSidechainMinMover

Typedefs
typedef utility::pointer::owning_ptr < SymDockingHiRes >	SymDockingHiResOP
typedef utility::pointer::owning_ptr < SymDockingHiRes const >	SymDockingHiResCOP
typedef utility::pointer::owning_ptr < SymDockingLowRes >	SymDockingLowResOP
typedef utility::pointer::owning_ptr < SymDockingLowRes const >	SymDockingLowResCOP
typedef utility::pointer::owning_ptr < SymDockProtocol >	SymDockProtocolOP
typedef utility::pointer::owning_ptr < SymDockProtocol const >	SymDockProtocolCOP
typedef utility::pointer::owning_ptr < SymFoldandDockMoveRbJumpMover >	SymFoldandDockMoveRbJumpMoverOP
typedef utility::pointer::owning_ptr < SymFoldandDockMoveRbJumpMover const >	SymFoldandDockMoveRbJumpMoverCOP
typedef utility::pointer::owning_ptr < SymFoldandDockRbTrialMover >	SymFoldandDockRbTrialMoverOP
typedef utility::pointer::owning_ptr < SymFoldandDockRbTrialMover const >	SymFoldandDockRbTrialMoverCOP
typedef utility::pointer::owning_ptr < SymFoldandDockSlideTrialMover >	SymFoldandDockSlideTrialMoverOP
typedef utility::pointer::owning_ptr < SymFoldandDockSlideTrialMover const >	SymFoldandDockSlideTrialMoverCOP
typedef utility::pointer::owning_ptr < SymRestrictTaskForDocking >	SymRestrictTaskForDockingOP
typedef utility::pointer::owning_ptr < SymSidechainMinMover >	SymSidechainMinMoverOP
typedef utility::pointer::owning_ptr < SymSidechainMinMover >	SymSidechainMinMoverCOP
typedef utility::pointer::owning_ptr < SymInterfaceSidechainMinMover >	SymInterfaceSidechainMinMoverOP
typedef utility::pointer::owning_ptr < SymInterfaceSidechainMinMover >	SymInterfaceSidechainMinMoverCOP

Functions
static basic::Tracer	TR ("protocols.symmetric_docking.SymDockBaseProtocol")
static basic::Tracer	TR ("protocols.symmetric_docking.SymDockProtocol")
void	SymDock_main ()
static basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockMoveRbJumpMover")
static basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockRbTrialMover")
static basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockSlideTrialMover")

Typedef Documentation

typedef utility::pointer::owning_ptr< SymDockingHiRes const > protocols::symmetric_docking::SymDockingHiResCOP

Definition at line 26 of file SymDockingHiRes.fwd.hh.

typedef utility::pointer::owning_ptr< SymDockingHiRes > protocols::symmetric_docking::SymDockingHiResOP

Definition at line 24 of file SymDockingHiRes.fwd.hh.

typedef utility::pointer::owning_ptr< SymDockingLowRes const > protocols::symmetric_docking::SymDockingLowResCOP

Definition at line 26 of file SymDockingLowRes.fwd.hh.

typedef utility::pointer::owning_ptr< SymDockingLowRes > protocols::symmetric_docking::SymDockingLowResOP

Definition at line 24 of file SymDockingLowRes.fwd.hh.

typedef utility::pointer::owning_ptr< SymDockProtocol const > protocols::symmetric_docking::SymDockProtocolCOP

Definition at line 26 of file SymDockProtocol.fwd.hh.

typedef utility::pointer::owning_ptr< SymDockProtocol > protocols::symmetric_docking::SymDockProtocolOP

Definition at line 24 of file SymDockProtocol.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockMoveRbJumpMover const > protocols::symmetric_docking::SymFoldandDockMoveRbJumpMoverCOP

Definition at line 27 of file SymFoldandDockMoveRbJumpMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockMoveRbJumpMover > protocols::symmetric_docking::SymFoldandDockMoveRbJumpMoverOP

Definition at line 25 of file SymFoldandDockMoveRbJumpMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockRbTrialMover const > protocols::symmetric_docking::SymFoldandDockRbTrialMoverCOP

Definition at line 27 of file SymFoldandDockRbTrialMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockRbTrialMover > protocols::symmetric_docking::SymFoldandDockRbTrialMoverOP

Definition at line 25 of file SymFoldandDockRbTrialMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockSlideTrialMover const > protocols::symmetric_docking::SymFoldandDockSlideTrialMoverCOP

Definition at line 27 of file SymFoldandDockSlideTrialMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymFoldandDockSlideTrialMover > protocols::symmetric_docking::SymFoldandDockSlideTrialMoverOP

Definition at line 25 of file SymFoldandDockSlideTrialMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymInterfaceSidechainMinMover > protocols::symmetric_docking::SymInterfaceSidechainMinMoverCOP

Definition at line 28 of file SymSidechainMinMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymInterfaceSidechainMinMover > protocols::symmetric_docking::SymInterfaceSidechainMinMoverOP

Definition at line 26 of file SymSidechainMinMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymRestrictTaskForDocking > protocols::symmetric_docking::SymRestrictTaskForDockingOP

Definition at line 21 of file SymRestrictTaskForDocking.fwd.hh.

typedef utility::pointer::owning_ptr< SymSidechainMinMover > protocols::symmetric_docking::SymSidechainMinMoverCOP

Definition at line 24 of file SymSidechainMinMover.fwd.hh.

typedef utility::pointer::owning_ptr< SymSidechainMinMover > protocols::symmetric_docking::SymSidechainMinMoverOP

Definition at line 22 of file SymSidechainMinMover.fwd.hh.

Function Documentation

void protocols::symmetric_docking::SymDock_main

(

)

Definition at line 110 of file SymDockProtocol.cc.

References protocols::moves::MoverContainer::add_mover(), protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::JobDistributor::go().

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.symmetric_docking.SymDockBaseProtocol"  )

static

Referenced by protocols::symmetric_docking::SymFoldandDockSlideTrialMover::apply(), protocols::symmetric_docking::SymFoldandDockRbTrialMover::apply(), protocols::symmetric_docking::SymDockingLowRes::apply(), protocols::symmetric_docking::SymDockingHiRes::apply(), protocols::symmetric_docking::SymDockProtocol::apply(), protocols::symmetric_docking::SymDockProtocol::docking_highres_filter(), protocols::symmetric_docking::SymDockProtocol::docking_lowres_filter(), protocols::symmetric_docking::SymDockProtocol::recover_sidechains(), protocols::symmetric_docking::SymDockingLowRes::set_default_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_mcm_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_min_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_ppk_protocol(), and protocols::symmetric_docking::SymDockingHiRes::setup_packing().

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockMoveRbJumpMover"  )

static

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockRbTrialMover"  )

static

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockSlideTrialMover"  )

static

static basic::Tracer protocols::symmetric_docking::TR ( "protocols.symmetric_docking.SymDockProtocol"  )

static