| apply(core::pose::Pose &pose_to_visualize) | protocols::swa::protein::StepWiseProteinPoseMinimizer | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| calc_rms_res_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| fa_scorefxn_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| Filters_map typedef | protocols::moves::Mover | |
| fixed_res_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::swa::protein::StepWiseProteinPoseMinimizer | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_parameters() | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| initialize_protein_input_silent_file_data_from_pose_list(PoseList &pose_list) | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| input_silent_file_data_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| let_neighboring_chis_minimize(core::kinematics::MoveMap &mm, core::pose::Pose &pose) | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| min_tolerance_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| min_type_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| move_jumps_between_chains_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| move_takeoff_torsions_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| moving_residues_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| pose_has_chainbreak(core::pose::Pose const &pose) | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| pose_list_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| rescore_only_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_calc_rms_res(utility::vector1< core::Size > const &calc_rms_res) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_fixed_res(utility::vector1< core::Size > const &fixed_res) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_min_tolerance(core::Real const &setting) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| set_min_type(std::string const &setting) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| set_move_jumps_between_chains(bool const &setting) | protocols::swa::protein::StepWiseProteinPoseMinimizer | inline |
| set_move_takeoff_torsions(bool const value) | protocols::swa::protein::StepWiseProteinPoseMinimizer | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_rescore_only(bool const &setting) | protocols::swa::protein::StepWiseProteinPoseMinimizer | inline |
| set_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| set_silent_file(std::string const &setting) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| sfd_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| silent_file_ | protocols::swa::protein::StepWiseProteinPoseMinimizer | private |
| silent_file_data() | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| StepWiseProteinPoseMinimizer(core::io::silent::SilentFileDataOP sfd, utility::vector1< Size > const &moving_residues) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| StepWiseProteinPoseMinimizer(PoseList &pose_list, utility::vector1< Size > const &moving_residues) | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~StepWiseProteinPoseMinimizer() | protocols::swa::protein::StepWiseProteinPoseMinimizer | |
1.8.4