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core::pack::interaction_graph::EdgeBase Class Referenceabstract

#include <InteractionGraphBase.hh>

Inheritance diagram for core::pack::interaction_graph::EdgeBase:
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Collaboration diagram for core::pack::interaction_graph::EdgeBase:
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Public Member Functions

virtual ~EdgeBase ()
 copy constructor, do not use More...
 
 EdgeBase (InteractionGraphBase *owner, int first_node_ind, int second_node_ind)
 main constructor for edge, no default nor copy constructors More...
 
int get_other_ind (int callers_index) const
 returns the index of the other node that the edge is incident upon More...
 
NodeBase * get_other_node (int callers_index) const
 returns a pointer to the other node that the edge is incident upon More...
 
int get_first_node_ind () const
 returns the index of the smaller-indexed node More...
 
int get_second_node_ind () const
 returns the index of the larger-indexed node More...
 
void set_pos_in_owners_list (std::list< EdgeBase * >::iterator edge_iterator)
 edge keeps iterator to its position in it's owner's edge list More...
 
void set_pos_in_node_edgevector (int callers_index, int position)
 edge keeps index it has in node_ind's edge vector More...
 
bool same_edge (int node1, int node2) const
 returns true if this edge connects nodes of index node1 and node2 the order of node1 and node2 is not important More...
 
virtual void declare_energies_final ()=0
 
virtual void prepare_for_simulated_annealing ()=0
 
virtual unsigned int count_static_memory () const =0
 
virtual unsigned int count_dynamic_memory () const
 
Real edge_weight () const
 
virtual void set_edge_weight (Real weight)=0
 
InteractionGraphBase const * get_owner () const
 
InteractionGraphBase * get_owner ()
 

Protected Member Functions

int get_node_index (int index) const
 
int get_num_states_for_node (int index) const
 
NodeBase const * get_node (int index) const
 
NodeBase * get_node (int index)
 
int get_edges_position_in_nodes_edge_vector (int index) const
 
int which_node (int node_index) const
 is a node the first or second node this edge is incident upon? More...
 
void edge_weight (Real)
 protected setter of the edge weight. To be called by derived classes after they have completed the conversion from the previous edge weighting to the new edge weighting. More...
 

Private Member Functions

 EdgeBase ()
 
 EdgeBase (EdgeBase const &)
 
EdgeBase & operator= (EdgeBase &)
 

Private Attributes

int node_indices_ [2]
 
int num_node_states_ [2]
 
NodeBase * nodes_ [2]
 
int pos_in_nodes_edge_vector_ [2]
 
std::list< EdgeBase * >::iterator pos_in_nodes_edge_list_ [2]
 
std::list< EdgeBase * >::iterator pos_in_owners_edge_list_
 
InteractionGraphBase * owner_
 
Real edge_weight_
 

Detailed Description

Definition at line 187 of file InteractionGraphBase.hh.

Constructor & Destructor Documentation

core::pack::interaction_graph::EdgeBase::~EdgeBase ( )
virtual

copy constructor, do not use

NodeBase::NodeBase( NodeBase const & rhs)

Detailed:
Parameters
@parGlobal Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:
EdgeBase::~EdgeBase

destructor

Detailed: removes all record of this edge from edge-lists of
the 1) nodes this edge is incident upon and 2) the owning interaction graph
Parameters
@parGlobal Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 433 of file InteractionGraphBase.cc.

References core::pack::interaction_graph::NodeBase::drop_edge(), core::pack::interaction_graph::InteractionGraphBase::drop_edge(), nodes_, owner_, pos_in_nodes_edge_list_, and pos_in_owners_edge_list_.

core::pack::interaction_graph::EdgeBase::EdgeBase ( InteractionGraphBase *  owner,
int  first_node_ind,
int  second_node_ind 
)

main constructor for edge, no default nor copy constructors

EdgeBase::EdgeBase(InteractionGraphBase, int, int)

Detailed: edge adds itself to the edge list of the two nodes its set to be
incident upon, and stores the list-iterators that the nodes return.
Parameters
owner- [in] - owning InteractionGraph
first_node_ind- [in] - the index of the first node
second_node_ind- [in] - the index of the second node
Global Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 472 of file InteractionGraphBase.cc.

References core::pack::interaction_graph::InteractionGraphBase::ig_nodes_.

core::pack::interaction_graph::EdgeBase::EdgeBase ( )
private
core::pack::interaction_graph::EdgeBase::EdgeBase ( EdgeBase const &  )
private

Member Function Documentation

unsigned int core::pack::interaction_graph::EdgeBase::count_dynamic_memory ( ) const
virtual

Reimplemented in protocols::flexpack::interaction_graph::FlexbbEdge, core::pack::interaction_graph::LinearMemEdge, core::pack::interaction_graph::PDEdge, core::pack::interaction_graph::LazyEdge, core::pack::interaction_graph::DoubleLazyEdge, core::pack::interaction_graph::SymmOnTheFlyEdge, core::pack::interaction_graph::SymmLinearMemEdge, core::pack::interaction_graph::FASTEREdge, core::pack::interaction_graph::OnTheFlyEdge, core::pack::interaction_graph::DensePDEdge, core::pack::interaction_graph::DoubleDensePDEdge, core::pack::interaction_graph::SymmMinimalistEdge, protocols::flexpack::interaction_graph::MinimalistFlexbbEdge, and protocols::flexpack::interaction_graph::OTFFlexbbEdge.

Definition at line 694 of file InteractionGraphBase.cc.

Referenced by core::pack::interaction_graph::DoubleDensePDEdge::count_dynamic_memory(), core::pack::interaction_graph::DensePDEdge::count_dynamic_memory(), core::pack::interaction_graph::OnTheFlyEdge::count_dynamic_memory(), core::pack::interaction_graph::FASTEREdge::count_dynamic_memory(), core::pack::interaction_graph::SymmOnTheFlyEdge::count_dynamic_memory(), core::pack::interaction_graph::PDEdge::count_dynamic_memory(), and protocols::flexpack::interaction_graph::FlexbbEdge::count_dynamic_memory().

virtual unsigned int core::pack::interaction_graph::EdgeBase::count_static_memory ( ) const
pure virtual

Implemented in core::pack::interaction_graph::LinearMemEdge, core::pack::interaction_graph::PDEdge, core::pack::interaction_graph::LazyEdge, core::pack::interaction_graph::DoubleLazyEdge, core::pack::interaction_graph::SymmOnTheFlyEdge, core::pack::interaction_graph::SymmLinearMemEdge, core::pack::interaction_graph::FASTEREdge, core::pack::interaction_graph::OnTheFlyEdge, core::pack::interaction_graph::DensePDEdge, core::pack::interaction_graph::DoubleDensePDEdge, core::pack::interaction_graph::SymmMinimalistEdge, and protocols::flexpack::interaction_graph::MinimalistFlexbbEdge.

virtual void core::pack::interaction_graph::EdgeBase::declare_energies_final ( )
pure virtual

Implemented in core::pack::interaction_graph::LinearMemEdge, core::pack::interaction_graph::SymmLinearMemEdge, core::pack::interaction_graph::PDEdge, core::pack::interaction_graph::DoubleLazyEdge, core::pack::interaction_graph::FASTEREdge, core::pack::interaction_graph::SymmMinimalistEdge, core::pack::interaction_graph::LazyEdge, core::pack::interaction_graph::DensePDEdge, core::pack::interaction_graph::DoubleDensePDEdge, and protocols::flexpack::interaction_graph::MinimalistFlexbbEdge.

Referenced by core::pack::interaction_graph::PrecomputedPairEnergiesInteractionGraph::declare_edge_energies_final().

Real core::pack::interaction_graph::EdgeBase::edge_weight ( ) const
inline

Definition at line 208 of file InteractionGraphBase.hh.

References edge_weight_.

Referenced by protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_altbbconf_alternate_state_energy(), core::pack::interaction_graph::OnTheFlyNode::compute_rotamer_pair_energy(), core::pack::interaction_graph::SymmOnTheFlyNode::compute_rotamer_pair_energy(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_samebbconf_alternate_state_energy_first_node(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_samebbconf_alternate_state_energy_second_node(), core::pack::interaction_graph::InteractionGraphBase::get_edge_weight(), core::pack::interaction_graph::DoubleLazyEdge::get_two_body_energy_smi(), protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::set_edge_weight(), core::pack::interaction_graph::SymmMinimalistEdge::set_edge_weight(), core::pack::interaction_graph::DoubleDensePDEdge::set_edge_weight(), core::pack::interaction_graph::DensePDEdge::set_edge_weight(), core::pack::interaction_graph::SymmLinearMemEdge::set_edge_weight(), core::pack::interaction_graph::DoubleLazyEdge::set_edge_weight(), core::pack::interaction_graph::FASTEREdge::set_edge_weight(), core::pack::interaction_graph::LazyEdge::set_edge_weight(), core::pack::interaction_graph::LinearMemEdge::set_edge_weight(), and core::pack::interaction_graph::PDEdge::set_edge_weight().

void core::pack::interaction_graph::EdgeBase::edge_weight ( Real  new_weight)
protected

protected setter of the edge weight. To be called by derived classes after they have completed the conversion from the previous edge weighting to the new edge weighting.

Definition at line 700 of file InteractionGraphBase.cc.

References edge_weight_.

int core::pack::interaction_graph::EdgeBase::get_edges_position_in_nodes_edge_vector ( int  index) const
inlineprotected

Definition at line 248 of file InteractionGraphBase.hh.

References pos_in_nodes_edge_vector_.

Referenced by core::pack::interaction_graph::FASTEREdge::acknowledge_partial_state_assignment(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::LazyEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::LinearMemEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::FASTEREdge::acknowledge_perturbed_state(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_state_change(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_state_change(), core::pack::interaction_graph::LazyEdge::acknowledge_state_change(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_change(), core::pack::interaction_graph::LinearMemEdge::acknowledge_state_change(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DoubleDensePDEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DensePDEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::LazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::FASTEREdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::PDEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::LinearMemEdge::acknowledge_state_zeroed(), protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::acknowledge_substitution(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_substitution(), core::pack::interaction_graph::DoubleDensePDEdge::acknowledge_substitution(), core::pack::interaction_graph::DensePDEdge::acknowledge_substitution(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_substitution(), core::pack::interaction_graph::FASTEREdge::acknowledge_substitution(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_substitution(), core::pack::interaction_graph::LazyEdge::acknowledge_substitution(), core::pack::interaction_graph::PDEdge::acknowledge_substitution(), core::pack::interaction_graph::LinearMemEdge::acknowledge_substitution(), core::pack::interaction_graph::DoubleLazyEdge::get_aa_submatrix_energies(), core::pack::interaction_graph::LazyEdge::get_aa_submatrix_energies(), core::pack::interaction_graph::SymmMinimalistEdge::get_energy_following_partial_state_assignment(), core::pack::interaction_graph::SymmLinearMemEdge::get_energy_following_partial_state_assignment(), core::pack::interaction_graph::LinearMemEdge::get_energy_following_partial_state_assignment(), core::pack::interaction_graph::SymmMinimalistEdge::get_energy_for_alt_state(), core::pack::interaction_graph::LazyEdge::get_energy_for_state_pair(), core::pack::interaction_graph::LazyEdge::get_two_body_energy(), and core::pack::interaction_graph::DoubleLazyEdge::get_two_body_energy_smi().

int core::pack::interaction_graph::EdgeBase::get_first_node_ind ( ) const

returns the index of the smaller-indexed node

EdgeBase::get_first_node_ind

Detailed:
Parameters
@parGlobal Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 568 of file InteractionGraphBase.cc.

References node_indices_.

NodeBase const* core::pack::interaction_graph::EdgeBase::get_node ( int  index) const
inlineprotected

Definition at line 233 of file InteractionGraphBase.hh.

References nodes_.

Referenced by core::pack::interaction_graph::DoubleLazyEdge::get_dlazy_node(), core::pack::interaction_graph::DoubleDensePDEdge::get_dpd_node(), core::pack::interaction_graph::DensePDEdge::get_dpd_node(), core::pack::interaction_graph::FASTEREdge::get_faster_node(), protocols::flexpack::interaction_graph::FlexbbEdge::get_flexbb_node(), core::pack::interaction_graph::LazyEdge::get_lazy_node(), core::pack::interaction_graph::LinearMemEdge::get_linmem_node(), protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::get_minimalistflexbb_node(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::get_otfflexbb_node(), core::pack::interaction_graph::PDEdge::get_pd_node(), core::pack::interaction_graph::SymmMinimalistEdge::get_symmin_node(), and core::pack::interaction_graph::SymmLinearMemEdge::get_symmlinmem_node().

NodeBase* core::pack::interaction_graph::EdgeBase::get_node ( int  index)
inlineprotected

Definition at line 241 of file InteractionGraphBase.hh.

References nodes_.

int core::pack::interaction_graph::EdgeBase::get_node_index ( int  index) const
inlineprotected

Definition at line 218 of file InteractionGraphBase.hh.

References node_indices_.

Referenced by core::pack::interaction_graph::FASTEREdge::acknowledge_partial_state_assignment(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::LazyEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::LinearMemEdge::acknowledge_partial_state_change(), core::pack::interaction_graph::FASTEREdge::acknowledge_perturbed_state(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_state_change(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_state_change(), core::pack::interaction_graph::LazyEdge::acknowledge_state_change(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_change(), core::pack::interaction_graph::LinearMemEdge::acknowledge_state_change(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DoubleDensePDEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DensePDEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::LazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::FASTEREdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::PDEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::LinearMemEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::SymmMinimalistEdge::acknowledge_substitution(), core::pack::interaction_graph::DoubleDensePDEdge::acknowledge_substitution(), core::pack::interaction_graph::DensePDEdge::acknowledge_substitution(), core::pack::interaction_graph::SymmLinearMemEdge::acknowledge_substitution(), core::pack::interaction_graph::FASTEREdge::acknowledge_substitution(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_substitution(), core::pack::interaction_graph::LazyEdge::acknowledge_substitution(), core::pack::interaction_graph::PDEdge::acknowledge_substitution(), core::pack::interaction_graph::LinearMemEdge::acknowledge_substitution(), core::pack::interaction_graph::SymmOnTheFlyEdge::add_ProCorrection_values(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_altbbconf_alternate_state_energy(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_samebbconf_alternate_state_energy_first_node(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_samebbconf_alternate_state_energy_second_node(), core::pack::interaction_graph::FASTEREdge::get_deltaE_for_neighbor_following_perturbation(), core::pack::interaction_graph::SymmMinimalistEdge::get_energy_for_alt_state(), core::pack::interaction_graph::FASTEREdge::get_energy_for_perturbed_state(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::print_alt_energies(), core::pack::interaction_graph::SymmMinimalistEdge::print_current_energy(), core::pack::interaction_graph::SymmLinearMemEdge::print_current_energy(), core::pack::interaction_graph::DoubleLazyEdge::print_current_energy(), core::pack::interaction_graph::LazyEdge::print_current_energy(), core::pack::interaction_graph::LinearMemEdge::print_current_energy(), core::pack::interaction_graph::SymmLinearMemEdge::reset_state_energies(), core::pack::interaction_graph::LinearMemEdge::reset_state_energies(), and core::pack::interaction_graph::OnTheFlyEdge::set_ProCorrection_values().

int core::pack::interaction_graph::EdgeBase::get_num_states_for_node ( int  index) const
inlineprotected

Definition at line 225 of file InteractionGraphBase.hh.

References num_node_states_.

Referenced by core::pack::interaction_graph::DensePDEdge::get_edge_table_ptr(), core::pack::interaction_graph::FASTEREdge::get_edge_table_ptr(), core::pack::interaction_graph::OnTheFlyEdge::OnTheFlyEdge(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::OTFFlexbbEdge(), core::pack::interaction_graph::SymmLinearMemEdge::prepare_for_simulated_annealing(), core::pack::interaction_graph::LinearMemEdge::prepare_for_simulated_annealing(), core::pack::interaction_graph::SymmLinearMemEdge::reset_state_energies(), core::pack::interaction_graph::LinearMemEdge::reset_state_energies(), and core::pack::interaction_graph::SymmOnTheFlyEdge::SymmOnTheFlyEdge().

int core::pack::interaction_graph::EdgeBase::get_other_ind ( int  node_ind) const

returns the index of the other node that the edge is incident upon

EdgeBase::get_other_ind

Detailed:
Parameters
node_ind- [in] - the node index of the node whose index is already known
Global Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 515 of file InteractionGraphBase.cc.

References node_indices_.

Referenced by core::pack::interaction_graph::NodeBase::add_edge(), protocols::simple_moves::GreenPacker::add_precomputed_energies(), protocols::enzdes::EnzdesFlexibleRegion::calculate_rotamer_set_design_targets_partition_sum(), and core::pack::setup_IG_res_res_weights().

NodeBase * core::pack::interaction_graph::EdgeBase::get_other_node ( int  node_ind) const

returns a pointer to the other node that the edge is incident upon

EdgeBase::get_other_node

Detailed:
Parameters
node_ind- [in] - the node index of the node whose index is already known
Global Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 542 of file InteractionGraphBase.cc.

References node_indices_, and nodes_.

InteractionGraphBase const* core::pack::interaction_graph::EdgeBase::get_owner ( ) const
inline

Definition at line 256 of file InteractionGraphBase.hh.

References owner_.

Referenced by core::pack::interaction_graph::DoubleLazyEdge::get_dlazy_ig_owner(), core::pack::interaction_graph::DoubleDensePDEdge::get_dpdig_owner(), core::pack::interaction_graph::DensePDEdge::get_dpdig_owner(), core::pack::interaction_graph::FASTEREdge::get_fasterig_owner(), protocols::flexpack::interaction_graph::FlexbbEdge::get_flexbbig_owner(), core::pack::interaction_graph::LazyEdge::get_lazy_ig_owner(), core::pack::interaction_graph::LinearMemEdge::get_linmem_ig_owner(), protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::get_minimalistflexbbig_owner(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::get_otfflexbbig_owner(), core::pack::interaction_graph::PDEdge::get_pdig_owner(), core::pack::interaction_graph::SymmMinimalistEdge::get_symmin_ig_owner(), core::pack::interaction_graph::SymmLinearMemEdge::get_symmlinmem_ig_owner(), and core::pack::interaction_graph::InteractionGraphBase::mine().

InteractionGraphBase* core::pack::interaction_graph::EdgeBase::get_owner ( )
inline

Definition at line 262 of file InteractionGraphBase.hh.

References owner_.

int core::pack::interaction_graph::EdgeBase::get_second_node_ind ( ) const

returns the index of the larger-indexed node

EdgeBase::get_second_node_ind()

Detailed:
Parameters
@parGlobal Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 592 of file InteractionGraphBase.cc.

References node_indices_.

EdgeBase& core::pack::interaction_graph::EdgeBase::operator= ( EdgeBase &  )
private
virtual void core::pack::interaction_graph::EdgeBase::prepare_for_simulated_annealing ( )
pure virtual

Implemented in core::pack::interaction_graph::LinearMemEdge, core::pack::interaction_graph::PDEdge, core::pack::interaction_graph::DoubleLazyEdge, core::pack::interaction_graph::FASTEREdge, core::pack::interaction_graph::LazyEdge, core::pack::interaction_graph::SymmLinearMemEdge, core::pack::interaction_graph::DensePDEdge, core::pack::interaction_graph::DoubleDensePDEdge, core::pack::interaction_graph::SymmMinimalistEdge, protocols::flexpack::interaction_graph::MinimalistFlexbbEdge, and protocols::flexpack::interaction_graph::OTFFlexbbEdge.

bool core::pack::interaction_graph::EdgeBase::same_edge ( int  node1,
int  node2 
) const

returns true if this edge connects nodes of index node1 and node2 the order of node1 and node2 is not important

EdgeBase::same_edge

Detailed:
Parameters
node1- [in] - index of one of the two nodes
node2- [in] - index of the other of the two nodes
Global Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 680 of file InteractionGraphBase.cc.

References node_indices_.

Referenced by core::pack::interaction_graph::InteractionGraphBase::find_edge().

virtual void core::pack::interaction_graph::EdgeBase::set_edge_weight ( Real  weight)
pure virtual

Implemented in core::pack::interaction_graph::PDEdge, core::pack::interaction_graph::LinearMemEdge, core::pack::interaction_graph::LazyEdge, core::pack::interaction_graph::FASTEREdge, core::pack::interaction_graph::DoubleLazyEdge, core::pack::interaction_graph::SymmLinearMemEdge, core::pack::interaction_graph::DensePDEdge, core::pack::interaction_graph::DoubleDensePDEdge, core::pack::interaction_graph::SymmMinimalistEdge, and protocols::flexpack::interaction_graph::MinimalistFlexbbEdge.

Referenced by core::pack::interaction_graph::InteractionGraphBase::set_edge_weight().

void core::pack::interaction_graph::EdgeBase::set_pos_in_node_edgevector ( int  node_ind,
int  vect_position 
)

edge keeps index it has in node_ind's edge vector

EdgeBase::set_pos_in_node_edgevector

Detailed:
Parameters
node_ind- [in] - the index of the node calling this method
vect_position- [in] - the position for this edge in the node's edge vector
Global Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 647 of file InteractionGraphBase.cc.

References node_indices_, and pos_in_nodes_edge_vector_.

void core::pack::interaction_graph::EdgeBase::set_pos_in_owners_list ( std::list< EdgeBase * >::iterator  iter)

edge keeps iterator to its position in it's owner's edge list

EdgeBase::set_pos_in_owners_list

Detailed:
Parameters
@parGlobal Read:
Global Write:
Remarks
References:
Authors
apl
Last Modified:

Definition at line 616 of file InteractionGraphBase.cc.

References pos_in_owners_edge_list_.

Referenced by core::pack::interaction_graph::InteractionGraphBase::add_edge().

int core::pack::interaction_graph::EdgeBase::which_node ( int  node_index) const
inlineprotected

is a node the first or second node this edge is incident upon?

Definition at line 272 of file InteractionGraphBase.hh.

References node_indices_.

Referenced by protocols::flexpack::interaction_graph::FlexbbEdge::acknowledge_partial_state_assignment(), protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::acknowledge_state_zeroed(), protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::acknowledge_substitution(), core::pack::interaction_graph::SymmOnTheFlyEdge::add_ProCorrection_values(), protocols::flexpack::interaction_graph::FlexbbEdge::set_alt_state(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::set_GlyCorrection_values(), protocols::flexpack::interaction_graph::FlexbbEdge::set_node_state_to_zero(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::set_ProCorrection_values(), and core::pack::interaction_graph::OnTheFlyEdge::set_ProCorrection_values().

Member Data Documentation

Real core::pack::interaction_graph::EdgeBase::edge_weight_
private

Allow the arbitrary scaling of energies for each edge. The derived classes have the responsibility of scaling each energy as it is added to the edge, and also updating all of the edge energies if the edge weight changes after all the edge energies have been stored – that is, by dividing each energy by the old weight and multiplying by the new weight.

Definition at line 298 of file InteractionGraphBase.hh.

Referenced by edge_weight().

int core::pack::interaction_graph::EdgeBase::node_indices_[2]
private

Definition at line 284 of file InteractionGraphBase.hh.

Referenced by get_first_node_ind(), get_node_index(), get_other_ind(), get_other_node(), get_second_node_ind(), same_edge(), set_pos_in_node_edgevector(), and which_node().

NodeBase* core::pack::interaction_graph::EdgeBase::nodes_[2]
private

Definition at line 286 of file InteractionGraphBase.hh.

Referenced by get_node(), get_other_node(), and ~EdgeBase().

int core::pack::interaction_graph::EdgeBase::num_node_states_[2]
private

Definition at line 285 of file InteractionGraphBase.hh.

Referenced by get_num_states_for_node().

InteractionGraphBase* core::pack::interaction_graph::EdgeBase::owner_
private

Definition at line 290 of file InteractionGraphBase.hh.

Referenced by get_owner(), and ~EdgeBase().

std::list< EdgeBase* >::iterator core::pack::interaction_graph::EdgeBase::pos_in_nodes_edge_list_[2]
private

Definition at line 288 of file InteractionGraphBase.hh.

Referenced by ~EdgeBase().

int core::pack::interaction_graph::EdgeBase::pos_in_nodes_edge_vector_[2]
private

Definition at line 287 of file InteractionGraphBase.hh.

Referenced by get_edges_position_in_nodes_edge_vector(), and set_pos_in_node_edgevector().

std::list< EdgeBase* >::iterator core::pack::interaction_graph::EdgeBase::pos_in_owners_edge_list_
private

Definition at line 289 of file InteractionGraphBase.hh.

Referenced by set_pos_in_owners_list(), and ~EdgeBase().

The documentation for this class was generated from the following files:
Generated on Sat Jun 1 2013 12:27:03 for Rosetta 3.5 by   doxygen 1.8.4