#include <InterfaceHolesFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::InterfaceHolesFilter:

Collaboration diagram for protocols::protein_interface_design::filters::InterfaceHolesFilter:

Public Member Functions
	InterfaceHolesFilter ()

	InterfaceHolesFilter (core::Size const rb_jump, core::Real const threshold)

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

protocols::filters::FilterOP	clone () const

protocols::filters::FilterOP	fresh_instance () const

	InterfaceHolesFilter (InterfaceHolesFilter const &init)

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

virtual	~InterfaceHolesFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Size	rb_jump_

core::Real	threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 30 of file InterfaceHolesFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( )

inline

Definition at line 33 of file InterfaceHolesFilter.hh.

Referenced by clone(), protocols::protein_interface_design::filters::InterfaceHolesFilterCreator::create_filter(), and fresh_instance().

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter	(	core::Size const	rb_jump,
		core::Real const	threshold
	)

inline

Definition at line 34 of file InterfaceHolesFilter.hh.

References rb_jump_, and threshold_.

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( InterfaceHolesFilter const & init)

inline

Definition at line 45 of file InterfaceHolesFilter.hh.

References rb_jump_, and threshold_.

protocols::protein_interface_design::filters::InterfaceHolesFilter::~InterfaceHolesFilter ( )

virtual

Definition at line 73 of file InterfaceHolesFilter.cc.

Member Function Documentation

bool protocols::protein_interface_design::filters::InterfaceHolesFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 76 of file InterfaceHolesFilter.cc.

References compute(), threshold_, and protocols::protein_interface_design::filters::TR().

protocols::filters::FilterOP protocols::protein_interface_design::filters::InterfaceHolesFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 39 of file InterfaceHolesFilter.hh.

References InterfaceHolesFilter().

core::Real protocols::protein_interface_design::filters::InterfaceHolesFilter::compute ( core::pose::Pose const & pose) const

Definition at line 38 of file InterfaceHolesFilter.cc.

References protocols::scoring::Interface::calculate(), core::scoring::holes_decoy, rb_jump_, core::scoring::ScoreFunction::set_weight(), protocols::protein_interface_design::filters::TR(), and protocols::swa::translate().

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::InterfaceHolesFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 42 of file InterfaceHolesFilter.hh.

References InterfaceHolesFilter().

void protocols::protein_interface_design::filters::InterfaceHolesFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &
	)