#include <AtomCountFilter.hh>

Inheritance diagram for protocols::ligand_docking::AtomCountFilter:

Collaboration diagram for protocols::ligand_docking::AtomCountFilter:

Public Member Functions
	AtomCountFilter ()

	AtomCountFilter (std::string chain, core::Size heavy_atom_limit)

	AtomCountFilter (AtomCountFilter const &init)

virtual	~AtomCountFilter ()

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

protocols::filters::FilterOP	clone () const

protocols::filters::FilterOP	fresh_instance () const

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &reference_pose)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual void	report (std::ostream &, core::pose::Pose const &) const

virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
std::string	chain_

core::Size	atom_limit_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 31 of file AtomCountFilter.hh.

Constructor & Destructor Documentation

protocols::ligand_docking::AtomCountFilter::AtomCountFilter ( )

inline

Definition at line 34 of file AtomCountFilter.hh.

Referenced by clone(), and fresh_instance().

protocols::ligand_docking::AtomCountFilter::AtomCountFilter	(	std::string	chain,
		core::Size	heavy_atom_limit
	)

inline

Definition at line 39 of file AtomCountFilter.hh.

protocols::ligand_docking::AtomCountFilter::AtomCountFilter ( AtomCountFilter const & init)

inline

Definition at line 46 of file AtomCountFilter.hh.

virtual protocols::ligand_docking::AtomCountFilter::~AtomCountFilter ( )

inlinevirtual

Definition at line 54 of file AtomCountFilter.hh.

Member Function Documentation

bool protocols::ligand_docking::AtomCountFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 42 of file AtomCountFilter.cc.

References atom_limit_, protocols::ligand_docking::atom_tracer(), chain_, core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), core::sequence::end, core::pose::get_chain_id_from_chain(), core::pose::num_atoms(), and protocols::loops::start.

protocols::filters::FilterOP protocols::ligand_docking::AtomCountFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 57 of file AtomCountFilter.hh.

References AtomCountFilter().

protocols::filters::FilterOP protocols::ligand_docking::AtomCountFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 61 of file AtomCountFilter.hh.

References AtomCountFilter().

void protocols::ligand_docking::AtomCountFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	reference_pose
	)