core::pack::task::operation::PreventRepacking Class Reference

PreventRepacking allows you to prevent repacking (NATRO behavior) through the Factory. Useful if you do not know the residue numbers when the resfile is created. Note that this is unlike RestrictToRepacking; you have to specify which residues. If PreventRepacking worked on the entire Task you'd have a do-nothing task. More...

#include <TaskOperations.hh>

Inheritance diagram for core::pack::task::operation::PreventRepacking:

Collaboration diagram for core::pack::task::operation::PreventRepacking:

Public Types
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
virtual	~PreventRepacking ()
	BEGIN PreventRepacking. More...
virtual TaskOperationOP	clone () const
	Create another task operation of the type matching the most-derived version of the class. More...
virtual void	apply (pose::Pose const &, PackerTask &) const
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	include_residue (core::Size resid)
void	clear ()
virtual void	parse_tag (TagPtr)
	Used to parse an xml-like tag to load parameters and properties. More...
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
utility::vector1< core::Size >	residues_to_prevent_
std::string	residue_selection_

Detailed Description

PreventRepacking allows you to prevent repacking (NATRO behavior) through the Factory. Useful if you do not know the residue numbers when the resfile is created. Note that this is unlike RestrictToRepacking; you have to specify which residues. If PreventRepacking worked on the entire Task you'd have a do-nothing task.

Definition at line 465 of file TaskOperations.hh.

Member Typedef Documentation

typedef TaskOperation core::pack::task::operation::PreventRepacking::parent

Definition at line 468 of file TaskOperations.hh.

Constructor & Destructor Documentation

core::pack::task::operation::PreventRepacking::~PreventRepacking ( )

virtual

BEGIN PreventRepacking.

Definition at line 966 of file TaskOperations.cc.

Member Function Documentation

void core::pack::task::operation::PreventRepacking::apply ( pose::Pose const &  , PackerTask &    ) const

virtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements core::pack::task::operation::TaskOperation.

Definition at line 979 of file TaskOperations.cc.

References core::sequence::end, core::pose::get_resnum_list_ordered(), core::pack::task::PackerTask::nonconst_residue_task(), core::pack::task::ResidueLevelTask::prevent_repacking(), residue_selection_, and residues_to_prevent_.

Referenced by protocols::toolbox::task_operations::RestrictToCDRH3Loop::apply(), and protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::apply().

void core::pack::task::operation::PreventRepacking::clear

(

)

Definition at line 995 of file TaskOperations.cc.

References residues_to_prevent_.

TaskOperationOP core::pack::task::operation::PreventRepacking::clone ( ) const

virtual

Create another task operation of the type matching the most-derived version of the class.

Implements core::pack::task::operation::TaskOperation.

Definition at line 973 of file TaskOperations.cc.

void core::pack::task::operation::PreventRepacking::include_residue

(

core::Size

resid)

Definition at line 992 of file TaskOperations.cc.

References residues_to_prevent_.

Referenced by protocols::toolbox::task_operations::RestrictToCDRH3Loop::apply(), protocols::toolbox::task_operations::PreventChainFromRepackingOperation::apply(), protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation::apply(), protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::apply(), and protocols::protein_interface_design::movers::PlaceStubMover::apply().

void core::pack::task::operation::PreventRepacking::parse_tag ( TagPtr  tag)

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 998 of file TaskOperations.cc.

References residue_selection_.

Member Data Documentation

std::string core::pack::task::operation::PreventRepacking::residue_selection_

private

Definition at line 486 of file TaskOperations.hh.

Referenced by apply(), and parse_tag().

utility::vector1< core::Size > core::pack::task::operation::PreventRepacking::residues_to_prevent_

private

Definition at line 485 of file TaskOperations.hh.

Referenced by apply(), clear(), and include_residue().

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The documentation for this class was generated from the following files:

• src/core/pack/task/operation/TaskOperations.hh
• src/core/pack/task/operation/TaskOperations.cc