protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache Class Reference

#include <EnzdesSeqRecoveryCache.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache:

Collaboration diagram for protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache:

Public Member Functions
	EnzdesSeqRecoveryCache ()
virtual	~EnzdesSeqRecoveryCache ()
	EnzdesSeqRecoveryCache (EnzdesSeqRecoveryCache const &other)
void	set_sequence (core::pose::Pose &native_pose)
std::map< core::Size, char >	get_sequence ()
void	set_designable_residues (std::set< core::Size > des_res)
std::set< core::Size >	get_designable_residues ()
core::Real	sequence_recovery (core::pose::Pose const &designed_pose) const
void	remap_residues (core::id::SequenceMapping const &smap)

Private Attributes
std::map< core::Size, char >	sequence_
std::set< core::Size >	designable_residues_

Detailed Description

Definition at line 43 of file EnzdesSeqRecoveryCache.hh.

Constructor & Destructor Documentation

protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::EnzdesSeqRecoveryCache

(

)

Definition at line 42 of file EnzdesSeqRecoveryCache.cc.

References designable_residues_, and sequence_.

protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::~EnzdesSeqRecoveryCache ( )

virtual

Definition at line 54 of file EnzdesSeqRecoveryCache.cc.

protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::EnzdesSeqRecoveryCache

(

EnzdesSeqRecoveryCache const &

other)

Definition at line 48 of file EnzdesSeqRecoveryCache.cc.

References designable_residues_, and sequence_.

Member Function Documentation

std::set< core::Size > protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::get_designable_residues

(

)

Definition at line 83 of file EnzdesSeqRecoveryCache.cc.

References designable_residues_.

std::map< core::Size, char > protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::get_sequence

(

)

Definition at line 66 of file EnzdesSeqRecoveryCache.cc.

References sequence_.

void protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::remap_residues

(

core::id::SequenceMapping const &

smap)

Definition at line 113 of file EnzdesSeqRecoveryCache.cc.

References designable_residues_, core::id::SequenceMapping::mapping(), and sequence_.

core::Real protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::sequence_recovery

(

core::pose::Pose const &

designed_pose)

const

Definition at line 88 of file EnzdesSeqRecoveryCache.cc.

References designable_residues_, core::conformation::Residue::name1(), core::pose::Pose::residue(), and sequence_.

void protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::set_designable_residues

(

std::set< core::Size >

des_res)

Definition at line 71 of file EnzdesSeqRecoveryCache.cc.

References designable_residues_, and sequence_.

void protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::set_sequence

(

core::pose::Pose &

native_pose)

Definition at line 57 of file EnzdesSeqRecoveryCache.cc.

References core::conformation::Residue::name1(), core::pose::Pose::residue(), sequence_, and core::pose::Pose::total_residue().

Member Data Documentation

std::set< core::Size > protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::designable_residues_

private

Definition at line 71 of file EnzdesSeqRecoveryCache.hh.

Referenced by EnzdesSeqRecoveryCache(), get_designable_residues(), remap_residues(), sequence_recovery(), and set_designable_residues().

std::map< core::Size, char > protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache::sequence_

private

Definition at line 70 of file EnzdesSeqRecoveryCache.hh.

Referenced by EnzdesSeqRecoveryCache(), get_sequence(), remap_residues(), sequence_recovery(), set_designable_residues(), and set_sequence().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/match_enzdes_util/EnzdesSeqRecoveryCache.hh
• src/protocols/toolbox/match_enzdes_util/EnzdesSeqRecoveryCache.cc