| allocate_buffers(core::Size) | protocols::canonical_sampling::ParallelTempering | private |
| apply(core::pose::Pose &) | protocols::canonical_sampling::ParallelTempering | inlinevirtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| check_temp_consistency() | protocols::canonical_sampling::TemperingBase | protected |
| clear() | protocols::canonical_sampling::TemperingBase | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::canonical_sampling::ParallelTempering | virtual |
| create() | protocols::moves::Mover | virtual |
| current_temp() | protocols::canonical_sampling::TemperingBase | inlineprotected |
| deallocate_buffers() | protocols::canonical_sampling::ParallelTempering | private |
| exchange_accepts_ | protocols::canonical_sampling::ParallelTempering | private |
| exchange_attempts_ | protocols::canonical_sampling::ParallelTempering | private |
| exchange_schedules_ | protocols::canonical_sampling::ParallelTempering | private |
| ExchangeSchedule typedef | protocols::canonical_sampling::ParallelTempering | private |
| Filters_map typedef | protocols::moves::Mover | |
| finalize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::ParallelTempering | virtual |
| fresh_instance() const | protocols::canonical_sampling::ParallelTempering | virtual |
| generate_temp_range(core::Real temp_low, core::Real temp_high, core::Size n_levels, InterpolationType interpolation=linear) | protocols::canonical_sampling::TemperingBase | protected |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::canonical_sampling::ParallelTempering | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init_from_options() | protocols::canonical_sampling::ParallelTempering | protectedvirtual |
| initialize_from_file(std::string const &filename) | protocols::canonical_sampling::TemperingBase | protectedvirtual |
| initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size cycle) | protocols::canonical_sampling::ParallelTempering | virtual |
| protocols::canonical_sampling::TemperingBase::initialize_simulation(core::pose::Pose &pose, protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover, core::Size level, core::Real temperature, core::Size cycle) | protocols::canonical_sampling::TemperingBase | virtual |
| last_energies_ | protocols::canonical_sampling::ParallelTempering | private |
| last_exchange_schedule_ | protocols::canonical_sampling::ParallelTempering | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| monte_carlo() const | protocols::canonical_sampling::TemperatureController | |
| monte_carlo() | protocols::canonical_sampling::TemperatureController | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| n_temp_levels() const | protocols::canonical_sampling::TemperingBase | virtual |
| name() | protocols::moves::Mover | inlinestatic |
| observe_after_metropolis(protocols::canonical_sampling::MetropolisHastingsMover const &metropolis_hastings_mover) | protocols::canonical_sampling::TemperatureController | virtual |
| operator=(ParallelTempering const &) | protocols::canonical_sampling::ParallelTempering | |
| protocols::canonical_sampling::TemperingBase::operator=(Mover const &other) | protocols::moves::Mover | |
| options_registered_ | protocols::canonical_sampling::ParallelTempering | privatestatic |
| ParallelTempering() | protocols::canonical_sampling::ParallelTempering | |
| ParallelTempering(ParallelTempering const &) | protocols::canonical_sampling::ParallelTempering | |
| Parent typedef | protocols::canonical_sampling::ParallelTempering | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &filters, protocols::moves::Movers_map const &movers, core::pose::Pose const &pose) | protocols::canonical_sampling::ParallelTempering | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| rank() | protocols::canonical_sampling::ParallelTempering | inlineprotected |
| rank2tlevel_ | protocols::canonical_sampling::ParallelTempering | private |
| rank_ | protocols::canonical_sampling::ParallelTempering | private |
| register_options() | protocols::canonical_sampling::ParallelTempering | static |
| reinitialize_for_each_job() const | protocols::canonical_sampling::TemperatureController | inlinevirtual |
| reinitialize_for_new_input() const | protocols::canonical_sampling::TemperatureController | inlinevirtual |
| requires_pose() | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
| reset_status() | protocols::moves::Mover | |
| restart_simulation(core::pose::Pose &, protocols::canonical_sampling::MetropolisHastingsMover &, core::Size &, core::Size &, core::Real &) | protocols::canonical_sampling::ThermodynamicObserver | inlinevirtual |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_current_temp(core::Size new_temp) | protocols::canonical_sampling::TemperingBase | protected |
| set_defaults() | protocols::canonical_sampling::ParallelTempering | protected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_monte_carlo(protocols::moves::MonteCarloOP monte_carlo) | protocols::canonical_sampling::TemperatureController | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_temperatures(utility::vector1< core::Real > const &) | protocols::canonical_sampling::TemperingBase | protected |
| setup_exchange_schedule(Size nlevels) | protocols::canonical_sampling::ParallelTempering | private |
| shuffle_temperatures(double *energies) | protocols::canonical_sampling::ParallelTempering | private |
| start_time_ | protocols::canonical_sampling::ParallelTempering | private |
| stats_file() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
| stats_line_output() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
| stats_silent_output() const | protocols::canonical_sampling::TemperingBase | inlineprotected |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| temperature() const | protocols::canonical_sampling::TemperingBase | virtual |
| temperature(core::Size level) const | protocols::canonical_sampling::TemperingBase | virtual |
| temperature_level() const | protocols::canonical_sampling::TemperingBase | inlinevirtual |
| temperature_move(core::Real score) | protocols::canonical_sampling::ParallelTempering | virtual |
| protocols::canonical_sampling::TemperingBase::temperature_move(core::pose::Pose &pose, core::Real score) | protocols::canonical_sampling::TemperatureController | virtual |
| TemperatureController() | protocols::canonical_sampling::TemperatureController | |
| TemperatureController(TemperatureController const &) | protocols::canonical_sampling::TemperatureController | |
| TemperingBase() | protocols::canonical_sampling::TemperingBase | |
| TemperingBase(TemperingBase const &) | protocols::canonical_sampling::TemperingBase | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| ThermodynamicObserver() | protocols::canonical_sampling::ThermodynamicObserver | |
| time_for_temp_move() | protocols::canonical_sampling::TemperingBase | inlineprotected |
| tlevel2rank_ | protocols::canonical_sampling::ParallelTempering | private |
| total_mpi_wait_time_ | protocols::canonical_sampling::ParallelTempering | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| write_to_file(std::string const &file_in, std::string const &output_name, utility::vector1< core::Real > const &wcounts) | protocols::canonical_sampling::TemperingBase | protectedvirtual |
| ~Mover() | protocols::moves::Mover | virtual |
| ~ParallelTempering() | protocols::canonical_sampling::ParallelTempering | |
| ~ThermodynamicObserver() | protocols::canonical_sampling::ThermodynamicObserver | virtual |
1.8.4