Classes
class	ProteinSilentStruct_SinglePrecCreator
	creator for the ProteinSilentStruct_SinglePrec class More...

class	ProteinSilentStructCreator
	creator for the ProteinSilentStruct class More...

class	RNA_SilentStructCreator
	creator for the RNA_SilentStruct class More...

class	BinaryProteinSilentStructCreator
	creator for the BinaryProteinSilentStruct class More...

class	ScoreFileSilentStructCreator
	creator for the ScoreFileSilentStruct class More...

class	BinaryRNASilentStructCreator
	creator for the BinaryRNASilentStruct class More...

class	BinaryProteinSilentStruct
	why this inheritance pathway? this makes no sense! More...

class	BinaryRNASilentStruct

class	EnergyNames

class	ProteinSilentStruct_Template

class	RNA_SilentStruct

class	ScoreFileSilentStruct

class	SharedSilentData

class	SimpleSequenceData

class	SilentEnergy
	Helper class for silent-file classes to keep track of energy information. More...

class	SilentFileData
	Abstract base class for classes that read and write different types of silent-files. Silent-files can contain SilentStruct objects which are expected, to be uniquely identified by some sort of string-based tag inside the file. More...

class	SilentFileLoader

class	SilentFileLoaderCreator
	creator for the SilentFileLoader class More...

class	SilentFileOptions

class	SilentFileOptionsCreator
	creator for the SilentFileOptions class More...

class	SilentStruct

class	SilentStructCreator
	Abstract base class for a Mover factory; the Creator class is responsible for creating a particular mover class. More...

class	SilentStructFactory

class	SilentStructRegistrator
	This templated class will register an instance of an SilentStructCreator (class T) with the SilentStructFactory. It will ensure that no SilentStructCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...

Typedefs
typedef utility::pointer::owning_ptr < EnergyNames >	EnergyNamesOP

typedef ProteinSilentStruct_Template < float >	ProteinSilentStruct_SinglePrec

typedef ProteinSilentStruct_Template < core::Real >	ProteinSilentStruct

typedef utility::pointer::owning_ptr < SharedSilentData >	SharedSilentDataOP

typedef utility::pointer::owning_ptr < SimpleSequenceData >	SimpleSequenceDataOP

typedef utility::pointer::owning_ptr < SilentStruct >	SilentStructOP

typedef utility::pointer::owning_ptr < SilentStruct const >	SilentStructCOP

typedef utility::pointer::owning_ptr < ProteinSilentStruct >	ProteinSilentStructOP

typedef utility::pointer::owning_ptr < BinaryProteinSilentStruct >	BinaryProteinSilentStructOP

typedef utility::pointer::owning_ptr < RNA_SilentStruct >	RNA_SilentStructOP

typedef std::map< std::string, SilentStructOP >	Structure_Map

typedef utility::vector1 < SilentStructOP >	SilentStructOPs

typedef utility::pointer::owning_ptr < SilentFileData >	SilentFileDataOP

typedef utility::pointer::owning_ptr < SilentFileLoader >	SilentFileLoaderOP

typedef utility::pointer::owning_ptr < SilentFileLoader const >	SilentFileLoaderCOP

typedef utility::pointer::owning_ptr < SilentFileOptions >	SilentFileOptionsOP

typedef utility::pointer::owning_ptr < SilentFileOptions const >	SilentFileOptionsCOP

typedef utility::pointer::owning_ptr < SilentStructCreator >	SilentStructCreatorOP

typedef utility::pointer::owning_ptr < SilentStructCreator const >	SilentStructCreatorCOP

typedef utility::pointer::owning_ptr < SilentStructFactory >	SilentStructFactoryOP

typedef utility::pointer::owning_ptr < SequenceFactory >	SequenceFactoryOP

Enumerations
enum	SharedSilentDataType { energynames = 1, simplesequencedata }

Functions
static basic::Tracer	tr ("core.io.silent")

static basic::Tracer	pss_tr ("core.io.silent")

static basic::Tracer	tr ("core.io.silent")

static basic::Tracer	tr ("core.io.silent.ScoreFileSilentStruct")

static basic::Tracer	tr ("core.io.silent")

static numeric::random::RandomGenerator	RG (21458)

static basic::Tracer	tr ("core.io.silent")

bool	SilentEnergy_sort_by_name (const SilentEnergy &score_energy1, const SilentEnergy &score_energy2)

static basic::Tracer	tr ("core.io.silent")

static basic::Tracer	tr ("core.io.silent")

void	gzip (void)
	gzip all of the files in -out::file::silent(). More...