protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter Class Reference

#include <SpecificResiduesNearInterfaceFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter:

Collaboration diagram for protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter:

Public Member Functions
	SpecificResiduesNearInterfaceFilter ()
	default ctor More...
	SpecificResiduesNearInterfaceFilter (SpecificResiduesNearInterfaceFilter const &src)
	~SpecificResiduesNearInterfaceFilter ()
core::pack::task::TaskFactoryOP	task_factory () const
void	task_factory (core::pack::task::TaskFactoryOP tf)
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
core::Size	compute (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
protocols::filters::FilterOP	clone () const
protocols::filters::FilterOP	fresh_instance () const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_
core::Size	rb_jump_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 34 of file SpecificResiduesNearInterfaceFilter.hh.

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::parent

private

Definition at line 37 of file SpecificResiduesNearInterfaceFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::SpecificResiduesNearInterfaceFilter

(

)

default ctor

Definition at line 67 of file SpecificResiduesNearInterfaceFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::SpecificResiduesNearInterfaceFilter

(

SpecificResiduesNearInterfaceFilter const &

src)

Definition at line 73 of file SpecificResiduesNearInterfaceFilter.cc.

protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::~SpecificResiduesNearInterfaceFilter

(

)

Definition at line 80 of file SpecificResiduesNearInterfaceFilter.cc.

Member Function Documentation

bool protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::apply ( core::pose::Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 170 of file SpecificResiduesNearInterfaceFilter.cc.

References compute().

FilterOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 88 of file SpecificResiduesNearInterfaceFilter.cc.

References SpecificResiduesNearInterfaceFilter().

Size protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::compute

(

core::pose::Pose const &

pose)

const

Constructor with a single target residue.

Definition at line 131 of file SpecificResiduesNearInterfaceFilter.cc.

References protocols::scoring::Interface::calculate(), core::pose::Pose::conformation(), protocols::scoring::Interface::is_interface(), core::conformation::Conformation::num_chains(), rb_jump_, task_factory_, and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

FilterOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 83 of file SpecificResiduesNearInterfaceFilter.cc.

References SpecificResiduesNearInterfaceFilter().

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  data, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 106 of file SpecificResiduesNearInterfaceFilter.cc.

References protocols::rosetta_scripts::parse_task_operations(), rb_jump_, and task_factory().

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 178 of file SpecificResiduesNearInterfaceFilter.cc.

References compute().

Real protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 189 of file SpecificResiduesNearInterfaceFilter.cc.

References compute().

TaskFactoryOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory

(

)

const

Definition at line 94 of file SpecificResiduesNearInterfaceFilter.cc.

References task_factory_.

Referenced by parse_my_tag().

void protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory

(

core::pack::task::TaskFactoryOP

tf)

Member Data Documentation

core::Size protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::rb_jump_

private

Definition at line 69 of file SpecificResiduesNearInterfaceFilter.hh.

Referenced by compute(), and parse_my_tag().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter::task_factory_

private

Definition at line 68 of file SpecificResiduesNearInterfaceFilter.hh.

Referenced by compute(), and task_factory().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/SpecificResiduesNearInterfaceFilter.hh
• src/protocols/protein_interface_design/filters/SpecificResiduesNearInterfaceFilter.cc