core::pack::task::PIKNA Class Reference

PIKNA allows nucleic acid residues specifed in a following string. More...

#include <ResfileReader.hh>

Inheritance diagram for core::pack::task::PIKNA:

Collaboration diagram for core::pack::task::PIKNA:

Public Member Functions
virtual ResfileCommandOP	clone () const
virtual void	initialize_from_tokens (utility::vector1< std::string > const &tokens, Size &which_token, Size resid)
	PIKNA allows nucleic acid residues specifed in a following string uses a string of single letter codes. More...
virtual void	residue_action (PackerTask &, Size resid) const
	Modify the packer task with the command that was read in. More...
Public Member Functions inherited from core::pack::task::ResfileCommand
virtual	~ResfileCommand ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Static Public Member Functions
static std::string	name ()

Private Attributes
utility::vector1< chemical::AA >	keep_nas_

Detailed Description

PIKNA allows nucleic acid residues specifed in a following string.

Definition at line 309 of file ResfileReader.hh.

Member Function Documentation

virtual ResfileCommandOP core::pack::task::PIKNA::clone ( ) const

inlinevirtual

Implements core::pack::task::ResfileCommand.

Definition at line 312 of file ResfileReader.hh.

void core::pack::task::PIKNA::initialize_from_tokens ( utility::vector1< std::string > const &  tokens, Size &  which_token, Size  resid  )

virtual

PIKNA allows nucleic acid residues specifed in a following string uses a string of single letter codes.

Implements core::pack::task::ResfileCommand.

Definition at line 694 of file ResfileReader.cc.

References core::chemical::aa_unk, core::pack::task::get_token(), core::chemical::na_ade, core::chemical::na_cyt, core::chemical::na_gua, core::chemical::na_thy, core::pack::task::onError(), and core::pack::task::TR().

static std::string core::pack::task::PIKNA::name ( )

inlinestatic

Definition at line 327 of file ResfileReader.hh.

Referenced by core::pack::task::create_command_map().

void core::pack::task::PIKNA::residue_action ( PackerTask &  , Size  resid  ) const

virtual

Modify the packer task with the command that was read in.

Implements core::pack::task::ResfileCommand.

Definition at line 734 of file ResfileReader.cc.

References core::pack::task::PackerTask::nonconst_residue_task(), and core::pack::task::ResidueLevelTask::restrict_absent_nas().

Member Data Documentation

utility::vector1< chemical::AA > core::pack::task::PIKNA::keep_nas_

private

Definition at line 329 of file ResfileReader.hh.

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The documentation for this class was generated from the following files:

• src/core/pack/task/ResfileReader.hh
• src/core/pack/task/ResfileReader.cc