protocols::simple_filters::HolesFilter Class Reference

#include <HolesFilter.hh>

Inheritance diagram for protocols::simple_filters::HolesFilter:

Collaboration diagram for protocols::simple_filters::HolesFilter:

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef std::string	String
typedef utility::tag::TagPtr	TagPtr
typedef protocols::filters::Filters_map	Filters_map
typedef protocols::moves::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	HolesFilter ()
	HolesFilter (HolesFilter const &rval)
virtual	~HolesFilter ()
virtual filters::FilterOP	clone () const
virtual filters::FilterOP	fresh_instance () const
void	filtered_value (Real const &ss)
virtual std::string	name () const
virtual void	parse_my_tag (TagPtr const tag, DataMap &, filters::Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...
Real	compute (Pose const &pose) const
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	filtered_value_
String	cmd_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 44 of file HolesFilter.hh.

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::simple_filters::HolesFilter::DataMap

Definition at line 56 of file HolesFilter.hh.

typedef protocols::filters::Filter protocols::simple_filters::HolesFilter::Filter

Definition at line 48 of file HolesFilter.hh.

typedef protocols::filters::FilterOP protocols::simple_filters::HolesFilter::FilterOP

Definition at line 49 of file HolesFilter.hh.

typedef protocols::filters::Filters_map protocols::simple_filters::HolesFilter::Filters_map

Definition at line 55 of file HolesFilter.hh.

typedef protocols::moves::Movers_map protocols::simple_filters::HolesFilter::Movers_map

Definition at line 57 of file HolesFilter.hh.

typedef core::pose::Pose protocols::simple_filters::HolesFilter::Pose

Definition at line 51 of file HolesFilter.hh.

typedef core::Real protocols::simple_filters::HolesFilter::Real

Definition at line 50 of file HolesFilter.hh.

typedef std::string protocols::simple_filters::HolesFilter::String

Definition at line 52 of file HolesFilter.hh.

typedef protocols::filters::Filter protocols::simple_filters::HolesFilter::Super

Definition at line 47 of file HolesFilter.hh.

typedef utility::tag::TagPtr protocols::simple_filters::HolesFilter::TagPtr

Definition at line 54 of file HolesFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::HolesFilter::HolesFilter

(

)

Definition at line 42 of file HolesFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::HolesFilter::HolesFilter

(

HolesFilter const &

rval)

Definition at line 49 of file HolesFilter.cc.

virtual protocols::simple_filters::HolesFilter::~HolesFilter ( )

inlinevirtual

Definition at line 72 of file HolesFilter.hh.

Member Function Documentation

bool protocols::simple_filters::HolesFilter::apply ( Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 93 of file HolesFilter.cc.

References compute(), filtered_value_, and protocols::simple_filters::tr().

virtual filters::FilterOP protocols::simple_filters::HolesFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 79 of file HolesFilter.hh.

References HolesFilter().

HolesFilter::Real protocols::simple_filters::HolesFilter::compute

(

Pose const &

pose)

const

Definition at line 78 of file HolesFilter.cc.

References cmd_, core::scoring::packing::compute_holes_score(), and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

void protocols::simple_filters::HolesFilter::filtered_value

(

Real const &

ss)

Definition at line 57 of file HolesFilter.cc.

References filtered_value_.

virtual filters::FilterOP protocols::simple_filters::HolesFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 82 of file HolesFilter.hh.

References HolesFilter().

virtual std::string protocols::simple_filters::HolesFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Definition at line 96 of file HolesFilter.hh.

void protocols::simple_filters::HolesFilter::parse_my_tag ( TagPtr const  tag, DataMap &  , filters::Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

Definition at line 107 of file HolesFilter.cc.

References cmd_, filtered_value_, and protocols::simple_filters::tr().

void protocols::simple_filters::HolesFilter::report ( std::ostream &  out, Pose const &  pose  ) const

virtual

used to report score

Reimplemented from protocols::filters::Filter.

Definition at line 71 of file HolesFilter.cc.

References compute().

HolesFilter::Real protocols::simple_filters::HolesFilter::report_sm ( Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 64 of file HolesFilter.cc.

References compute().

Member Data Documentation

String protocols::simple_filters::HolesFilter::cmd_

private

Definition at line 131 of file HolesFilter.hh.

Referenced by compute(), and parse_my_tag().

Real protocols::simple_filters::HolesFilter::filtered_value_

private

Definition at line 129 of file HolesFilter.hh.

Referenced by apply(), filtered_value(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/HolesFilter.hh
• src/protocols/simple_filters/HolesFilter.cc