protocols::swa::protein::StepWiseProteinPacker Member List

This is the complete list of members for protocols::swa::protein::StepWiseProteinPacker, including all inherited members.

apply(core::pose::Pose &pose_to_visualize)	protocols::swa::protein::StepWiseProteinPacker	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
apply_regular_packer(core::pose::Pose &pose)	protocols::swa::protein::StepWiseProteinPacker	private
calc_rms_res_	protocols::swa::protein::StepWiseProteinPacker	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
figure_out_neighbors(core::pose::Pose &pose, utility::vector1< bool > &residues_allowed_to_be_packed)	protocols::swa::protein::StepWiseProteinPacker	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::swa::protein::StepWiseProteinPacker	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
green_packer_	protocols::swa::protein::StepWiseProteinPacker	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initialize_for_regular_packer(core::pose::Pose &pose)	protocols::swa::protein::StepWiseProteinPacker	private
initialize_green_packer(core::Size const &nres)	protocols::swa::protein::StepWiseProteinPacker	private
initialize_moving_residues_including_junction(Size const &nres)	protocols::swa::protein::StepWiseProteinPacker	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
moving_residues_	protocols::swa::protein::StepWiseProteinPacker	private
name()	protocols::moves::Mover	inlinestatic
operator=(Mover const &other)	protocols::moves::Mover
pack_at_neighbors_only_	protocols::swa::protein::StepWiseProteinPacker	private
pack_task_	protocols::swa::protein::StepWiseProteinPacker	private
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
pose_filter_	protocols::swa::protein::StepWiseProteinPacker	private
pose_init_	protocols::swa::protein::StepWiseProteinPacker	private
PoseCOP typedef	protocols::moves::Mover
print_tag(std::string const &tag, Size const k)	protocols::swa::protein::StepWiseProteinPacker	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reinstate_side_chain_angles(core::pose::Pose &pose, core::pose::Pose const &src_pose)	protocols::swa::protein::StepWiseProteinPacker	private
rescore_only_	protocols::swa::protein::StepWiseProteinPacker	private
reset_status()	protocols::moves::Mover
sample_generator_	protocols::swa::protein::StepWiseProteinPacker	private
sample_residues(core::pose::Pose &pose)	protocols::swa::protein::StepWiseProteinPacker	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
scorefxn_	protocols::swa::protein::StepWiseProteinPacker	private
set_calc_rms_res(utility::vector1< core::Size > const &calc_rms_res)	protocols::swa::protein::StepWiseProteinPacker
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_pose_filter(protocols::swa::PoseFilterOP pose_filter)	protocols::swa::protein::StepWiseProteinPacker
set_rescore_only(bool const &setting)	protocols::swa::protein::StepWiseProteinPacker	inline
set_scorefxn(core::scoring::ScoreFunctionOP const &scorefxn)	protocols::swa::protein::StepWiseProteinPacker
set_silent_file(std::string const &setting)	protocols::swa::protein::StepWiseProteinPacker
set_use_green_packer(bool const &setting)	protocols::swa::protein::StepWiseProteinPacker
set_use_packer_instead_of_rotamer_trials(bool const &setting)	protocols::swa::protein::StepWiseProteinPacker
sfd_	protocols::swa::protein::StepWiseProteinPacker	private
silent_file_	protocols::swa::protein::StepWiseProteinPacker	private
silent_file_data()	protocols::swa::protein::StepWiseProteinPacker
StepWiseProteinPacker(utility::vector1< Size > const &moving_residues, protocols::swa::StepWisePoseSampleGeneratorOP sample_generator)	protocols::swa::protein::StepWiseProteinPacker
Strings typedef	protocols::moves::Mover
TagPtr typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
use_green_packer_	protocols::swa::protein::StepWiseProteinPacker	private
use_packer_instead_of_rotamer_trials_	protocols::swa::protein::StepWiseProteinPacker	private
~Mover()	protocols::moves::Mover	virtual
~StepWiseProteinPacker()	protocols::swa::protein::StepWiseProteinPacker