protocols::enzdes::LigDSasaFilter Class Reference

#include <EnzFilters.hh>

Inheritance diagram for protocols::enzdes::LigDSasaFilter:

Collaboration diagram for protocols::enzdes::LigDSasaFilter:

Public Types
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef protocols::filters::Filters_map	Filters_map

Public Member Functions
	LigDSasaFilter ()
	LigDSasaFilter (core::Real const lower_threshold, core::Real const upper_threshold)
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
FilterOP	clone () const
FilterOP	fresh_instance () const
virtual	~LigDSasaFilter ()
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
core::Real	lower_threshold_
core::Real	upper_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 43 of file EnzFilters.hh.

Member Typedef Documentation

typedef protocols::filters::Filter protocols::enzdes::LigDSasaFilter::Filter

Definition at line 47 of file EnzFilters.hh.

typedef protocols::filters::FilterOP protocols::enzdes::LigDSasaFilter::FilterOP

Definition at line 48 of file EnzFilters.hh.

typedef protocols::filters::Filters_map protocols::enzdes::LigDSasaFilter::Filters_map

Definition at line 49 of file EnzFilters.hh.

Constructor & Destructor Documentation

protocols::enzdes::LigDSasaFilter::LigDSasaFilter ( )

inline

Definition at line 52 of file EnzFilters.hh.

Referenced by clone(), and fresh_instance().

protocols::enzdes::LigDSasaFilter::LigDSasaFilter	(	core::Real const	lower_threshold,
		core::Real const	upper_threshold
	)

Definition at line 100 of file EnzFilters.cc.

protocols::enzdes::LigDSasaFilter::~LigDSasaFilter ( )

virtual

Definition at line 158 of file EnzFilters.cc.

Member Function Documentation

bool protocols::enzdes::LigDSasaFilter::apply ( core::pose::Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 103 of file EnzFilters.cc.

References compute(), lower_threshold_, protocols::enzdes::TR(), and upper_threshold_.

FilterOP protocols::enzdes::LigDSasaFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 58 of file EnzFilters.hh.

References LigDSasaFilter().

core::Real protocols::enzdes::LigDSasaFilter::compute

(

core::pose::Pose const &

pose)

const

Definition at line 130 of file EnzFilters.cc.

References core::pose::Pose::chain(), core::chemical::ResidueType::is_ligand(), core::pose::Pose::metric(), core::pose::Pose::residue_type(), core::pose::Pose::total_residue(), and protocols::enzdes::TR().

Referenced by apply(), report(), and report_sm().

FilterOP protocols::enzdes::LigDSasaFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 61 of file EnzFilters.hh.

References LigDSasaFilter().

void protocols::enzdes::LigDSasaFilter::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  , Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 150 of file EnzFilters.cc.

References lower_threshold_, protocols::enzdes::TR(), and upper_threshold_.

void protocols::enzdes::LigDSasaFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 118 of file EnzFilters.cc.

References compute().

core::Real protocols::enzdes::LigDSasaFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 124 of file EnzFilters.cc.

References compute().

Member Data Documentation

core::Real protocols::enzdes::LigDSasaFilter::lower_threshold_

private

Definition at line 68 of file EnzFilters.hh.

Referenced by apply(), and parse_my_tag().

core::Real protocols::enzdes::LigDSasaFilter::upper_threshold_

private

Definition at line 68 of file EnzFilters.hh.

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/enzdes/EnzFilters.hh
• src/protocols/enzdes/EnzFilters.cc