annotated_sequence.hh File Reference

#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <string>
#include <utility/vector1.hh>

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Namespaces
	core
	A class for defining atom parameters, known as atom_types.
	core::pose

Constant Groups
	core
	A class for defining atom parameters, known as atom_types.
	core::pose

Functions
chemical::ResidueTypeCOPs	core::pose::residue_types_from_sequence (std::string const &sequence_in, chemical::ResidueTypeSet const &residue_set, bool const auto_termini=true)
	return a list of ResidueTypes corresponding to an annotated protein sequence More...
chemical::ResidueTypeCOPs	core::pose::residue_types_from_saccharide_sequence (std::string const &sequence, chemical::ResidueTypeSet const &residue_set)
	Return a list of carbohydrate ResidueTypes corresponding to an annotated polysaccharide sequence. More...
void	core::pose::make_pose_from_sequence (pose::Pose &pose, std::string const &sequence, chemical::ResidueTypeSet const &residue_set, bool const auto_termini=true)
	Creates a Pose from the annotated protein sequence <sequence> with ResidueTypeSet <residue_set> and stores it in <pose> More...
void	core::pose::make_pose_from_sequence (pose::Pose &pose, std::string const &sequence, std::string const &type_set_name, bool const auto_termini=true)
	Creates a Pose from the annotated protein sequence <sequence> with the desired <type_set_name> and stores it in <pose> More...
void	core::pose::make_pose_from_saccharide_sequence (pose::Pose &pose, std::string const &sequence, chemical::ResidueTypeSet const &residue_set, bool const auto_termini=true)
	Create a Pose from an annotated polysaccharide sequence <sequence> with ResidueTypeSet <residue_set> and stores it in <pose>. More...
void	core::pose::make_pose_from_saccharide_sequence (pose::Pose &pose, std::string const &sequence, std::string const &type_set_name="fa_standard", bool const auto_termini=true)
	Create a Pose from an annotated polysaccharide sequence <sequence> with residue type set name <type_set_name> and stores it in <pose>. More...
pose::PoseOP	core::pose::pose_from_saccharide_sequence (std::string const &sequence, std::string const &type_set_name="fa_standard", bool const auto_termini=true)
	Return a Pose from an annotated polysaccharide sequence <sequence> with residue type set name <type_set_name>. More...
std::string	core::pose::annotated_to_oneletter_sequence (std::string const &annotated_seq)
	Returns the oneletter_sequence that corresponds to the given annotated sequence. More...