core::coarse::TranslatorSet Class Reference

#include <TranslatorSet.hh>

Inheritance diagram for core::coarse::TranslatorSet:

Collaboration diagram for core::coarse::TranslatorSet:

Public Types
typedef std::string	ResName
typedef std::map< ResName, TranslatorCOP >	TranslatorMap
typedef TranslatorMap::iterator	iterator
typedef TranslatorMap::const_iterator	const_iterator
typedef pack::dunbrack::RotamerLibrary	RotamerLibrary
typedef utility::pointer::access_ptr < chemical::ResidueTypeSet >	ResidueTypeSetAP

Public Member Functions
	TranslatorSet (const RuleSet &rules, chemical::ResidueTypeSetCAP residue_set, ResidueTypeSetAP coarse_set)
void	pretty_print (std::ostream &os) const
	prints Translator mappings More...
void	coarsify (pose::Pose &pose_out, pose::Pose const &pose_in) const
	generate new coarseified pose from coordinates in pose_in More...
conformation::ResidueOP	coarsify (const conformation::Residue &fine_rsd) const
	generate new coarsified residue from coordinates in fine_rsd More...
bool	has (ResName name) const
TranslatorCOP const &	default_for_aa (chemical::AA aa) const

Protected Member Functions
iterator	begin ()
const_iterator	begin () const
iterator	end ()
const_iterator	end () const

Private Attributes
TranslatorMap	coarse_maps_
const chemical::ResidueTypeSetCAP	residue_set_
const chemical::ResidueTypeSetCAP	coarse_residue_set_

Detailed Description

Definition at line 62 of file TranslatorSet.hh.

Member Typedef Documentation

typedef TranslatorMap::const_iterator core::coarse::TranslatorSet::const_iterator

Definition at line 70 of file TranslatorSet.hh.

typedef TranslatorMap::iterator core::coarse::TranslatorSet::iterator

Definition at line 69 of file TranslatorSet.hh.

typedef utility::pointer::access_ptr< chemical::ResidueTypeSet > core::coarse::TranslatorSet::ResidueTypeSetAP

Definition at line 72 of file TranslatorSet.hh.

typedef std::string core::coarse::TranslatorSet::ResName

Definition at line 67 of file TranslatorSet.hh.

typedef pack::dunbrack::RotamerLibrary core::coarse::TranslatorSet::RotamerLibrary

Definition at line 71 of file TranslatorSet.hh.

typedef std::map<ResName,TranslatorCOP> core::coarse::TranslatorSet::TranslatorMap

Definition at line 68 of file TranslatorSet.hh.

Constructor & Destructor Documentation

core::coarse::TranslatorSet::TranslatorSet	(	const RuleSet &	rules,
		chemical::ResidueTypeSetCAP	residue_set,
		ResidueTypeSetAP	coarse_set
	)

Definition at line 45 of file TranslatorSet.cc.

References core::chemical::ResidueType::aa(), coarse_maps_, coarse_residue_set_, core::chemical::ResidueType::name(), core::chemical::ResidueType::name3(), residue_set_, core::pack::interaction_graph::T(), and core::coarse::TR().

Member Function Documentation

iterator core::coarse::TranslatorSet::begin ( )

inlineprotected

Definition at line 101 of file TranslatorSet.hh.

References coarse_maps_.

Referenced by pretty_print().

const_iterator core::coarse::TranslatorSet::begin ( ) const

inlineprotected

Definition at line 102 of file TranslatorSet.hh.

References coarse_maps_.

void core::coarse::TranslatorSet::coarsify	(	pose::Pose &	pose_out,
		pose::Pose const &	pose_in
	)		const

generate new coarseified pose from coordinates in pose_in

Definition at line 97 of file TranslatorSet.cc.

References core::pose::Pose::append_residue_by_bond(), core::pose::Pose::clear(), core::pose::Pose::fold_tree(), core::pose::Pose::residue(), and core::pose::Pose::total_residue().

conformation::ResidueOP core::coarse::TranslatorSet::coarsify

(

const conformation::Residue &

fine_rsd)

const

generate new coarsified residue from coordinates in fine_rsd

Definition at line 107 of file TranslatorSet.cc.

References coarse_maps_, has(), and core::conformation::Residue::name().

TranslatorCOP const & core::coarse::TranslatorSet::default_for_aa

(

chemical::AA

aa)

const

Definition at line 85 of file TranslatorSet.cc.

References coarse_maps_, and residue_set_.

iterator core::coarse::TranslatorSet::end ( )

inlineprotected

Definition at line 104 of file TranslatorSet.hh.

References coarse_maps_.

Referenced by pretty_print().

const_iterator core::coarse::TranslatorSet::end ( ) const

inlineprotected

Definition at line 105 of file TranslatorSet.hh.

References coarse_maps_.

bool core::coarse::TranslatorSet::has

(

TranslatorSet::ResName

name)

const

Definition at line 112 of file TranslatorSet.cc.

References coarse_maps_.

Referenced by coarsify().

void core::coarse::TranslatorSet::pretty_print

(

std::ostream &

os)

const

prints Translator mappings

Definition at line 76 of file TranslatorSet.cc.

References begin(), and end().

Member Data Documentation

TranslatorMap core::coarse::TranslatorSet::coarse_maps_

mutableprivate

Definition at line 105 of file TranslatorSet.hh.

Referenced by begin(), coarsify(), default_for_aa(), end(), has(), and TranslatorSet().

const chemical::ResidueTypeSetCAP core::coarse::TranslatorSet::coarse_residue_set_

private

Definition at line 111 of file TranslatorSet.hh.

Referenced by TranslatorSet().

const chemical::ResidueTypeSetCAP core::coarse::TranslatorSet::residue_set_

private

Definition at line 110 of file TranslatorSet.hh.

Referenced by default_for_aa(), and TranslatorSet().

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The documentation for this class was generated from the following files:

• src/core/coarse/TranslatorSet.hh
• src/core/coarse/TranslatorSet.cc