superimpose.hh File Reference

#include <ObjexxFCL/FArray1D.hh>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <utility/vector1.hh>
#include <numeric/xyzMatrix.fwd.hh>
#include <ObjexxFCL/FArray2.fwd.hh>

Go to the source code of this file.

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::toolbox

Constant Groups
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::toolbox

Typedefs
typedef numeric::xyzMatrix < core::Real >	protocols::toolbox::Matrix
typedef numeric::xyzVector < core::Real >	protocols::toolbox::Vector

Functions
void	protocols::toolbox::CA_superimpose (ObjexxFCL::FArray1_double const &weights, core::pose::Pose const &ref_pose, core::pose::Pose &fit_pose)
void	protocols::toolbox::CA_superimpose (core::pose::Pose const &ref_pose, core::pose::Pose &fit_pose)
void	protocols::toolbox::fit_centered_coords (core::Size natoms, ObjexxFCL::FArray1_double const &weights, ObjexxFCL::FArray2_double const &ref_coords, ObjexxFCL::FArray2_double &coords, Matrix &R)
void	protocols::toolbox::reset_x (core::Size n, ObjexxFCL::FArray2_double &x, ObjexxFCL::FArray1_double const &wts, ObjexxFCL::FArray1_double &transvec)
void	protocols::toolbox::dump_as_pdb (std::string filename, core::Size n, ObjexxFCL::FArray2_double &coords, ObjexxFCL::FArray1D_double transvec=ObjexxFCL::FArray1D_double(3, 0.0))
	write a CA ALA pdb More...
void	protocols::toolbox::fill_CA_coords (core::pose::Pose const &pose, core::Size natoms, ObjexxFCL::FArray2_double &coords)
void	protocols::toolbox::fill_CA_coords (core::pose::Pose const &pose, ObjexxFCL::FArray2_double &coords)