the default constant length fragment Vall ExtentGenerator More...

#include <LengthGen.hh>

Inheritance diagram for core::fragment::picking_old::vall::gen::LengthGen:

Collaboration diagram for core::fragment::picking_old::vall::gen::LengthGen:

Public Types
typedef Super::Size	Size

typedef Super::Extent	Extent
	typedef for ExtentGenerator concept More...

typedef Super::PageIterator	PageIterator
	typedef for ExtentGenerator concept More...

typedef PageIterator	VallResidueIterator

Public Types inherited from core::fragment::picking_old::vall::gen::VallFragmentGen
typedef core::Size	Size

typedef core::fragment::picking_old::concepts::Extent < VallSection::PageConstIterator >	Extent
	typedef for ExtentGenerator concept More...

typedef Extent::PageIterator	PageIterator
	typedef for ExtentGenerator concept More...

typedef PageIterator	VallResidueIterator

Public Member Functions
	LengthGen ()
	default constructor More...

	LengthGen (Size const frag_size)
	fragment size constructor More...

	LengthGen (LengthGen const &rval)
	copy constructor More...

virtual	~LengthGen ()
	default destructor More...

LengthGen &	operator= (LengthGen const &rval)
	copy assignment More...

virtual VallFragmentGenOP	clone () const
	clone this object More...

virtual Extent	operator() (VallResidueIterator extent_begin, VallResidueIterator section_end) const
	return the desired fragment extent w/requested fragment size More...

Public Member Functions inherited from core::fragment::picking_old::vall::gen::VallFragmentGen
	VallFragmentGen ()
	default constructor More...

	VallFragmentGen (VallFragmentGen const &rval)
	copy constructor More...

virtual	~VallFragmentGen ()
	default destructor More...

VallFragmentGen &	operator= (VallFragmentGen const &rval)
	copy assignment More...

Private Types
typedef VallFragmentGen	Super

Private Attributes
Size	frag_size_
	the size of desired fragment More...

Detailed Description

the default constant length fragment Vall ExtentGenerator

Remarks: assumes that Pages in the Book are stored in a container capable of returning a RandomAccessIterator, such as std::vector

Definition at line 35 of file LengthGen.hh.

Member Typedef Documentation

typedef Super::Extent core::fragment::picking_old::vall::gen::LengthGen::Extent

typedef for ExtentGenerator concept

Definition at line 54 of file LengthGen.hh.

typedef Super::PageIterator core::fragment::picking_old::vall::gen::LengthGen::PageIterator

typedef for ExtentGenerator concept

Definition at line 58 of file LengthGen.hh.

typedef Super::Size core::fragment::picking_old::vall::gen::LengthGen::Size

Definition at line 47 of file LengthGen.hh.

typedef VallFragmentGen core::fragment::picking_old::vall::gen::LengthGen::Super

private

Definition at line 41 of file LengthGen.hh.

typedef PageIterator core::fragment::picking_old::vall::gen::LengthGen::VallResidueIterator

Definition at line 64 of file LengthGen.hh.

Constructor & Destructor Documentation

core::fragment::picking_old::vall::gen::LengthGen::LengthGen ( )

default constructor

Definition at line 29 of file LengthGen.cc.

Referenced by clone().

core::fragment::picking_old::vall::gen::LengthGen::LengthGen ( Size const frag_size)

fragment size constructor

Parameters

[in] frag_size the desired length of the fragment

Definition at line 36 of file LengthGen.cc.

core::fragment::picking_old::vall::gen::LengthGen::LengthGen ( LengthGen const & rval)

copy constructor

Definition at line 43 of file LengthGen.cc.

core::fragment::picking_old::vall::gen::LengthGen::~LengthGen ( )

virtual

default destructor

Definition at line 50 of file LengthGen.cc.

Member Function Documentation

VallFragmentGenOP core::fragment::picking_old::vall::gen::LengthGen::clone ( ) const

virtual

clone this object

Implements core::fragment::picking_old::vall::gen::VallFragmentGen.

Definition at line 65 of file LengthGen.cc.

References LengthGen().

LengthGen::Extent core::fragment::picking_old::vall::gen::LengthGen::operator()	(	VallResidueIterator	extent_begin,
		VallResidueIterator	section_end
	)		const