protocols::dna::DnaPosition Class Reference

#include <DnaChains.hh>

Collaboration diagram for protocols::dna::DnaPosition:

Public Member Functions
	DnaPosition ()
	Stores residue index/indices for a DNA position, which could be a basepair or a single-stranded position. Accomplishes what std::pair<Size,Size> would, but is nicer to use. More...
	DnaPosition (core::Size i)
	DnaPosition (core::Size i, core::Size j)
	~DnaPosition ()
core::Size	top () const
core::Size	bottom () const
bool	paired () const

Private Attributes
core::Size	top_
core::Size	bottom_
bool	paired_

Detailed Description

Definition at line 33 of file DnaChains.hh.

Constructor & Destructor Documentation

protocols::dna::DnaPosition::DnaPosition ( )

inline

Stores residue index/indices for a DNA position, which could be a basepair or a single-stranded position. Accomplishes what std::pair<Size,Size> would, but is nicer to use.

Definition at line 37 of file DnaChains.hh.

protocols::dna::DnaPosition::DnaPosition ( core::Size  i)

inline

Definition at line 39 of file DnaChains.hh.

protocols::dna::DnaPosition::DnaPosition ( core::Size  i, core::Size  j  )

inline

Definition at line 41 of file DnaChains.hh.

protocols::dna::DnaPosition::~DnaPosition ( )

inline

Definition at line 42 of file DnaChains.hh.

Member Function Documentation

core::Size protocols::dna::DnaPosition::bottom ( ) const

inline

Definition at line 46 of file DnaChains.hh.

References bottom_.

Referenced by protocols::dna::DnaInterfacePacker::add_complementary_sequence(), protocols::dna::DnaInterfaceMultiStateDesign::add_dna_states(), protocols::dna::WatsonCrickRotamerCouplings::apply(), protocols::dna::RestrictDesignToProteinDNAInterface::apply(), protocols::dna::DnaInterfacePacker::get_targeted_sequence(), and protocols::dna::DnaChains::print().

bool protocols::dna::DnaPosition::paired ( ) const

inline

Definition at line 47 of file DnaChains.hh.

References paired_.

Referenced by protocols::dna::DnaInterfacePacker::add_complementary_sequence(), protocols::dna::DnaInterfaceMultiStateDesign::add_dna_states(), protocols::dna::WatsonCrickRotamerCouplings::apply(), protocols::dna::RestrictDesignToProteinDNAInterface::apply(), protocols::dna::DnaInterfacePacker::get_targeted_sequence(), and protocols::dna::DnaChains::print().

core::Size protocols::dna::DnaPosition::top ( ) const

inline

Definition at line 45 of file DnaChains.hh.

References top_.

Referenced by protocols::dna::DnaInterfacePacker::add_complementary_sequence(), protocols::dna::DnaInterfaceMultiStateDesign::add_dna_states(), protocols::dna::WatsonCrickRotamerCouplings::apply(), protocols::dna::RestrictDesignToProteinDNAInterface::apply(), protocols::dna::DnaInterfacePacker::get_targeted_sequence(), and protocols::dna::DnaChains::print().

Member Data Documentation

core::Size protocols::dna::DnaPosition::bottom_

private

Definition at line 52 of file DnaChains.hh.

Referenced by bottom().

bool protocols::dna::DnaPosition::paired_

private

Definition at line 53 of file DnaChains.hh.

Referenced by paired().

core::Size protocols::dna::DnaPosition::top_

private

Definition at line 51 of file DnaChains.hh.

Referenced by top().

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The documentation for this class was generated from the following file:

• src/protocols/dna/DnaChains.hh