protocols::protein_interface_design::filters::AverageDegreeFilter Class Reference

#include <AverageDegreeFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::AverageDegreeFilter:

Collaboration diagram for protocols::protein_interface_design::filters::AverageDegreeFilter:

Public Member Functions
	AverageDegreeFilter ()
	default ctor More...
virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
virtual void	report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
core::Real	compute (core::pose::Pose const &pose) const
virtual	~AverageDegreeFilter ()
core::pack::task::TaskFactoryOP	task_factory () const
void	task_factory (core::pack::task::TaskFactoryOP task_factory)
void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
core::Real	threshold () const
void	threshold (core::Real threshold)
core::Real	distance_threshold () const
void	distance_threshold (core::Real const d)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::pack::task::TaskFactoryOP	task_factory_
core::Real	threshold_
core::Real	distance_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 35 of file AverageDegreeFilter.hh.

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::AverageDegreeFilter::parent

private

Definition at line 38 of file AverageDegreeFilter.hh.

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::AverageDegreeFilter::AverageDegreeFilter

(

)

default ctor

Definition at line 36 of file AverageDegreeFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::AverageDegreeFilter::~AverageDegreeFilter ( )

virtual

Definition at line 144 of file AverageDegreeFilter.cc.

Member Function Documentation

bool protocols::protein_interface_design::filters::AverageDegreeFilter::apply ( core::pose::Pose const &  pose) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

Definition at line 66 of file AverageDegreeFilter.cc.

References compute(), and threshold().

protocols::filters::FilterOP protocols::protein_interface_design::filters::AverageDegreeFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 147 of file AverageDegreeFilter.cc.

References AverageDegreeFilter().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::compute

(

core::pose::Pose const &

pose)

const

Definition at line 83 of file AverageDegreeFilter.cc.

References core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), core::pose::Pose::conformation(), core::kinematics::distance(), distance_threshold(), core::conformation::Conformation::num_chains(), core::conformation::Conformation::residue(), core::pose::Pose::residue(), task_factory(), core::pose::Pose::total_residue(), and protocols::protein_interface_design::filters::TR().

Referenced by apply(), report(), and report_sm().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold

(

)

const

Definition at line 73 of file AverageDegreeFilter.cc.

References distance_threshold_.

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold

(

core::Real const

d)

Definition at line 78 of file AverageDegreeFilter.cc.

References distance_threshold_.

protocols::filters::FilterOP protocols::protein_interface_design::filters::AverageDegreeFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

Definition at line 140 of file AverageDegreeFilter.cc.

References AverageDegreeFilter().

void protocols::protein_interface_design::filters::AverageDegreeFilter::parse_my_tag ( utility::tag::TagPtr const  tag, protocols::moves::DataMap &  data, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 126 of file AverageDegreeFilter.cc.

References distance_threshold(), protocols::rosetta_scripts::parse_task_operations(), task_factory(), threshold(), and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::AverageDegreeFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

Definition at line 120 of file AverageDegreeFilter.cc.

References compute().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

Definition at line 114 of file AverageDegreeFilter.cc.

References compute().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory

(

)

const

Definition at line 54 of file AverageDegreeFilter.cc.

References task_factory_.

Referenced by compute(), parse_my_tag(), and task_factory().

void protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory

(

core::pack::task::TaskFactoryOP

task_factory)

Definition at line 60 of file AverageDegreeFilter.cc.

References task_factory(), and task_factory_.

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::threshold

(

)

const

Definition at line 44 of file AverageDegreeFilter.cc.

References threshold_.

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::filters::AverageDegreeFilter::threshold

(

core::Real

threshold)

Definition at line 49 of file AverageDegreeFilter.cc.

References core::scoring::hbonds::t(), and threshold_.

Member Data Documentation

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::distance_threshold_

private

Definition at line 64 of file AverageDegreeFilter.hh.

Referenced by distance_threshold().

core::pack::task::TaskFactoryOP protocols::protein_interface_design::filters::AverageDegreeFilter::task_factory_

private

Definition at line 62 of file AverageDegreeFilter.hh.

Referenced by task_factory().

core::Real protocols::protein_interface_design::filters::AverageDegreeFilter::threshold_

private

Definition at line 63 of file AverageDegreeFilter.hh.

Referenced by threshold().

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The documentation for this class was generated from the following files:

• src/protocols/protein_interface_design/filters/AverageDegreeFilter.hh
• src/protocols/protein_interface_design/filters/AverageDegreeFilter.cc