core::sequence::Cell Class Reference

#include <DP_Matrix.hh>

Inheritance diagram for core::sequence::Cell:

Collaboration diagram for core::sequence::Cell:

Public Member Functions
	Cell ()
	Cell (Real const &sc, AlignMove const &ty=end)
virtual	~Cell ()
void	score (const Real &score)
Real	score () const
Cell &	operator= (Cell const &c)
void	next (CellOP n)
CellOP	next ()
AlignMove	came_from ()
void	came_from (AlignMove const &type)
void	x (Size const &s)
void	y (Size const &s)
Size	x ()
Size	y ()

Private Attributes
Real	score_
CellOP	backptr_
AlignMove	type_
utility::vector1< Size >	coords_

Detailed Description

Definition at line 39 of file DP_Matrix.hh.

Constructor & Destructor Documentation

core::sequence::Cell::Cell ( )

inline

Definition at line 42 of file DP_Matrix.hh.

core::sequence::Cell::Cell ( Real const &  sc, AlignMove const &  ty = end  )

inline

Definition at line 46 of file DP_Matrix.hh.

References backptr_, came_from(), and score().

core::sequence::Cell::~Cell ( )

virtual

Definition at line 35 of file DP_Matrix.cc.

Member Function Documentation

AlignMove core::sequence::Cell::came_from ( )

inline

Definition at line 80 of file DP_Matrix.hh.

References type_.

Referenced by Cell().

void core::sequence::Cell::came_from ( AlignMove const &  type)

inline

Definition at line 84 of file DP_Matrix.hh.

References type_.

void core::sequence::Cell::next ( CellOP  n)

inline

Definition at line 72 of file DP_Matrix.hh.

References backptr_.

CellOP core::sequence::Cell::next ( )

inline

Definition at line 76 of file DP_Matrix.hh.

References backptr_.

Cell& core::sequence::Cell::operator= ( Cell const &  c)

inline

Definition at line 67 of file DP_Matrix.hh.

References score().

void core::sequence::Cell::score ( const Real &  score)

inline

Definition at line 59 of file DP_Matrix.hh.

References score(), and score_.

Referenced by operator=().

Real core::sequence::Cell::score ( ) const

inline

Definition at line 63 of file DP_Matrix.hh.

References score_.

Referenced by Cell(), operator=(), and score().

void core::sequence::Cell::x ( Size const &  s)

inline

Definition at line 88 of file DP_Matrix.hh.

References coords_.

Size core::sequence::Cell::x ( )

inline

Definition at line 96 of file DP_Matrix.hh.

References coords_.

void core::sequence::Cell::y ( Size const &  s)

inline

Definition at line 92 of file DP_Matrix.hh.

References coords_.

Size core::sequence::Cell::y ( )

inline

Definition at line 100 of file DP_Matrix.hh.

References coords_.

Member Data Documentation

CellOP core::sequence::Cell::backptr_

private

Definition at line 106 of file DP_Matrix.hh.

Referenced by Cell(), and next().

utility::vector1< Size > core::sequence::Cell::coords_

private

Definition at line 108 of file DP_Matrix.hh.

Referenced by x(), and y().

Real core::sequence::Cell::score_

private

Definition at line 105 of file DP_Matrix.hh.

Referenced by score().

AlignMove core::sequence::Cell::type_

private

Definition at line 107 of file DP_Matrix.hh.

Referenced by came_from().

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The documentation for this class was generated from the following files:

• src/core/sequence/DP_Matrix.hh
• src/core/sequence/DP_Matrix.cc