Rosetta 3.5: core::pack::task::TaskFactory Class Reference

Factory class for the creation and initialization of PackerTask objects. More...

#include <TaskFactory.hh>

Inheritance diagram for core::pack::task::TaskFactory:

Inheritance graph

Collaboration diagram for core::pack::task::TaskFactory:

Collaboration graph

Public Types
typedef utility::pointer::ReferenceCount	parent

typedef operation::TaskOperation	TaskOperation

typedef operation::TaskOperationOP	TaskOperationOP

typedef operation::TaskOperationCOP	TaskOperationCOP

typedef operation::TaskOperationSP	TaskOperationSP

typedef std::list < TaskOperationOP >	OperationList

typedef OperationList::const_iterator	const_iterator

Public Member Functions
	TaskFactory ()

	TaskFactory (TaskFactory const &)

virtual	~TaskFactory ()

TaskFactory const &	operator= (TaskFactory const &)

virtual TaskFactoryOP	clone () const

PackerTaskOP	create_task_and_apply_taskoperations (pose::Pose const &pose) const
	Non static version. More...

void	modify_task (core::pose::Pose const &pose, PackerTaskOP task) const

void	push_back (TaskOperationCOP)
	clones the input task, and pushes it back into the list More...

void	push_back (TaskOperationSP)

const_iterator	begin () const
	begin iterator of operations_ More...

const_iterator	end () const
	end iterator of operations_ More...

void	clear ()

core::Size	size () const
	return the size of the operations_ list More...

Static Public Member Functions
static PackerTaskOP	create_packer_task (pose::Pose const &)
	Static construction of a task. More...

Private Member Functions
void	copy_operations (TaskFactory const &src)

Private Attributes
OperationList	operations_

Detailed Description

Factory class for the creation and initialization of PackerTask objects.

Definition at line 43 of file TaskFactory.hh.

Member Typedef Documentation

typedef OperationList::const_iterator core::pack::task::TaskFactory::const_iterator

Definition at line 52 of file TaskFactory.hh.

typedef std::list< TaskOperationOP > core::pack::task::TaskFactory::OperationList

Definition at line 51 of file TaskFactory.hh.

typedef utility::pointer::ReferenceCount core::pack::task::TaskFactory::parent

Definition at line 46 of file TaskFactory.hh.

typedef operation::TaskOperation core::pack::task::TaskFactory::TaskOperation

Definition at line 47 of file TaskFactory.hh.

typedef operation::TaskOperationCOP core::pack::task::TaskFactory::TaskOperationCOP

Definition at line 49 of file TaskFactory.hh.

typedef operation::TaskOperationOP core::pack::task::TaskFactory::TaskOperationOP

Definition at line 48 of file TaskFactory.hh.

typedef operation::TaskOperationSP core::pack::task::TaskFactory::TaskOperationSP

Definition at line 50 of file TaskFactory.hh.

Constructor & Destructor Documentation

core::pack::task::TaskFactory::TaskFactory ( )

Definition at line 32 of file TaskFactory.cc.

Referenced by clone().

core::pack::task::TaskFactory::TaskFactory ( TaskFactory const & src)

Definition at line 33 of file TaskFactory.cc.

References copy_operations().

core::pack::task::TaskFactory::~TaskFactory ( )

virtual

Definition at line 45 of file TaskFactory.cc.

Member Function Documentation

TaskFactory::const_iterator core::pack::task::TaskFactory::begin ( ) const

begin iterator of operations_

Definition at line 85 of file TaskFactory.cc.

References operations_.

Referenced by copy_operations().

void core::pack::task::TaskFactory::clear ( )

Definition at line 97 of file TaskFactory.cc.

References operations_.

TaskFactoryOP core::pack::task::TaskFactory::clone ( ) const

virtual

Definition at line 40 of file TaskFactory.cc.

References TaskFactory().

void core::pack::task::TaskFactory::copy_operations ( TaskFactory const & src)

private

Definition at line 112 of file TaskFactory.cc.

References begin(), end(), and operations_.

Referenced by operator=(), and TaskFactory().

PackerTaskOP core::pack::task::TaskFactory::create_packer_task ( pose::Pose const & pose)

static

Static construction of a task.

Definition at line 104 of file TaskFactory.cc.

Referenced by protocols::protein_interface_design::movers::PlaceOnLoop::add_bb_csts_to_loop(), protocols::enzdes::SecondaryMatchProtocol::add_enz_cst_interaction_to_pose(), protocols::hotspot_hashing::HotspotStubSet::add_hotspot_constraints_to_pose(), protocols::protein_interface_design::movers::PlaceOnLoop::ala_pose_loop(), protocols::simple_moves::ProlineFixMover::apply(), protocols::simple_filters::SAXSScoreFilter::apply(), protocols::abinitio::ResolutionSwitcher::apply(), protocols::protein_interface_design::movers::BestHotspotCstMover::apply(), protocols::simple_moves::ModifyVariantTypeMover::apply(), protocols::protein_interface_design::movers::PlacementAuctionMover::apply(), protocols::simple_moves::RepackSidechainsMover::apply(), protocols::protein_interface_design::movers::DisulfideMover::apply(), protocols::rbsegment_relax::RBSegmentRelax::apply(), protocols::protein_interface_design::movers::TryRotamers::apply(), protocols::relax::CentroidRelax::apply(), protocols::relax::FastRelax::apply(), protocols::dna::argrot_dna_dis2(), protocols::relax::FastRelax::batch_apply(), core::pack::rotamer_set::bb_independent_rotamers(), protocols::motifs::Motif::build_rotamers(), protocols::motifs::build_rotamers_lite(), protocols::jumping::ResiduePairJump::build_sidechain_rotamers(), protocols::simple_moves::ddG::calculate(), protocols::protein_interface_design::filters::AtomicContactCountFilter::compute(), protocols::hotspot_hashing::HotspotStubSet::create_hotspot_after_pose(), protocols::swa::rna::create_standard_o2star_pack_task(), protocols::ddG_main(), protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover::generate_csts(), protocols::ligand_docking::HighResDocker::make_packer_task_from_vector(), protocols::analysis::InterfaceAnalyzerMover::mut_to_gly(), protocols::motifs::mutate_loops_for_search(), protocols::frag_picker::FragmentCandidate::output_silent(), core::pack::pack_missing_sidechains(), protocols::simple_moves::sidechain_moves::SidechainMCMover::parse_my_tag(), protocols::protein_interface_design::movers::PlaceSimultaneouslyMover::parse_my_tag(), protocols::protein_interface_design::movers::parse_stub_sets(), point_mutation(), protocols::hotspot_hashing::HotspotStubSet::prepare_hashing_packer_task_(), protocols::enzdes::MinimizeStoredRBConfs::rb_minimize_all_confs(), core::util::rebuild_disulfide(), protocols::grafting::AnchoredGraftMover::repack_connection_and_residues_in_movemap(), protocols::grafting::AnchoredGraftMover::repack_connection_and_residues_in_movemap_and_piece(), protocols::simple_moves::symmetry::SymPackRotamersMover::setup(), protocols::simple_moves::DesignRepackMover::setup_packer_and_movemap(), protocols::hotspot_hashing::SurfaceSearchPattern::SurfaceSearchPattern(), protocols::topology_broker::TopologyBroker::switch_to_fullatom(), core::util::switch_to_residue_type_set(), protocols::simple_moves::ddG::symm_ddG(), and protocols::vip::VIP_Mover::try_point_mutants().

PackerTaskOP core::pack::task::TaskFactory::create_task_and_apply_taskoperations ( pose::Pose const & pose) const

Non static version.

Definition at line 64 of file TaskFactory.cc.

References modify_task().

Referenced by protocols::enzdes::RepackLigandSiteWithoutLigandMover::apply(), and protocols::hotspot_hashing::movers::PlaceProbeMover::create_refinement_packing_task().

TaskFactory::const_iterator core::pack::task::TaskFactory::end ( ) const

end iterator of operations_

Definition at line 91 of file TaskFactory.cc.

References operations_.

Referenced by copy_operations().

void core::pack::task::TaskFactory::modify_task	(	core::pose::Pose const &	pose,
		PackerTaskOP	task
	)		const

Definition at line 55 of file TaskFactory.cc.

Referenced by create_task_and_apply_taskoperations().

TaskFactory const & core::pack::task::TaskFactory::operator= ( TaskFactory const & rhs)

Definition at line 48 of file TaskFactory.cc.

References copy_operations().

void core::pack::task::TaskFactory::push_back ( TaskOperationCOP taskop)

clones the input task, and pushes it back into the list

Definition at line 73 of file TaskFactory.cc.

References operations_.

Referenced by protocols::canonical_sampling::MetropolisHastingsMover::add_sidechain_mc_mover(), protocols::canonical_sampling::MetropolisHastingsMover::add_sidechain_mover(), protocols::simple_moves::ForceDisulfidesMover::apply(), protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::apply(), protocols::protein_interface_design::movers::PrepackMover::apply(), protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation::apply(), protocols::comparative_modeling::LoopRelaxMover::apply(), protocols::enzdes::RepackLigandSiteWithoutLigandMover::apply(), protocols::simple_filters::RotamerBoltzmannWeight::compute_Boltzmann_weight(), protocols::enzdes::EnzdesBaseProtocol::create_enzdes_pack_task(), protocols::hotspot_hashing::movers::PlaceProbeMover::create_refinement_packing_task(), protocols::docking::DockingHighResLegacy::define_loops(), protocols::simple_moves::sidechain_moves::SidechainMoverBase::init_from_options(), protocols::protein_interface_design::movers::PlaceOnLoop::minimize_toward_stub(), protocols::match::TaskOperationMPM::modified_match_positions(), protocols::symmetric_docking::SymDockProtocol::recover_sidechains(), protocols::optimize_weights::IterativeOptEDriver::repack_and_minimize_pose(), and protocols::simple_filters::RelativePoseFilter::thread_seq().

void core::pack::task::TaskFactory::push_back ( TaskOperationSP taskop)

Definition at line 79 of file TaskFactory.cc.

References operations_.

core::Size core::pack::task::TaskFactory::size ( ) const

return the size of the operations_ list

Definition at line 123 of file TaskFactory.cc.

References operations_.

Member Data Documentation

OperationList core::pack::task::TaskFactory::operations_

private

Definition at line 102 of file TaskFactory.hh.

Referenced by begin(), clear(), copy_operations(), end(), push_back(), and size().

The documentation for this class was generated from the following files:

src/core/pack/task/TaskFactory.hh
src/core/pack/task/TaskFactory.cc