protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver Class Reference

#include <EnzdesCacheableObserver.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver:

Collaboration diagram for protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver:

Public Member Functions
	EnzdesCacheableObserver ()
	EnzdesCacheableObserver (EnzdesCacheableObserver const &other)
	~EnzdesCacheableObserver ()
virtual core::pose::datacache::CacheableObserverOP	clone ()
	clone this object More...
virtual core::pose::datacache::CacheableObserverOP	create ()
	create a new instance of this object More...
virtual bool	is_attached () const
	is this observer attached to a Pose/Conformation? More...
void	set_cst_cache (toolbox::match_enzdes_util::EnzdesCstCacheOP cst_cache)
toolbox::match_enzdes_util::EnzdesCstCacheOP	cst_cache ()
toolbox::match_enzdes_util::EnzdesCstCacheCOP	cst_cache () const
std::map< core::Size, utility::vector1 < core::conformation::ResidueCOP > > const &	lig_rigid_body_confs () const
void	set_rigid_body_confs_for_lig (core::Size seqpos, utility::vector1< core::conformation::ResidueCOP > const &rg_confs)
void	erase_rigid_body_confs_for_lig (core::Size seqpos)
void	set_seq_recovery_cache (EnzdesSeqRecoveryCacheOP seq_recovery_cache)
EnzdesSeqRecoveryCacheOP	get_seq_recovery_cache ()
EnzdesSeqRecoveryCacheCOP	get_seq_recovery_cache () const
void	set_enzdes_loops_file (EnzdesLoopsFileCOP loopfile_in)
EnzdesLoopsFileCOP	enzdes_loops_file () const
void	setup_favor_native_constraints (core::pose::Pose &pose, core::pack::task::PackerTaskCOP task, core::pose::Pose const &native_pose)
void	remove_favor_native_constraints (core::pose::Pose &pose)
Public Member Functions inherited from core::pose::datacache::CacheableObserver
	CacheableObserver ()
	default constructor More...
	CacheableObserver (CacheableObserver const &rval)
	copy constructor More...
virtual	~CacheableObserver ()
	default destructor More...
CacheableObserver &	operator= (CacheableObserver const &rval)
	copy assignment More...
void	attach_to (Pose &pose)
	attach to Pose/Conformation Derived classes do not overload this method – see attach_impl() instead. More...
void	detach_from ()
	detach from Pose/Conformation More...

Protected Member Functions
virtual void	attach_impl (core::pose::Pose &pose)
	attach to Pose/Conformation More...
virtual void	detach_impl ()
	detach from Pose/Conformation More...
void	on_length_change (core::conformation::signals::LengthEvent const &event)

Private Attributes
toolbox::match_enzdes_util::EnzdesCstCacheOP	cst_cache_
EnzdesSeqRecoveryCacheOP	seq_recovery_cache_
core::scoring::constraints::ConstraintCOPs	favor_native_constraints_
EnzdesLoopsFileCOP	enz_loops_file_
std::map< core::Size, utility::vector1 < core::conformation::ResidueCOP > >	lig_rigid_body_confs_
utility::signals::Link	length_event_link_

Detailed Description

Definition at line 60 of file EnzdesCacheableObserver.hh.

Constructor & Destructor Documentation

protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::EnzdesCacheableObserver

(

)

Definition at line 94 of file EnzdesCacheableObserver.cc.

References favor_native_constraints_, and lig_rigid_body_confs_.

Referenced by clone(), and create().

protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::EnzdesCacheableObserver

(

EnzdesCacheableObserver const &

other)

Definition at line 104 of file EnzdesCacheableObserver.cc.

References cst_cache_, and seq_recovery_cache_.

protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::~EnzdesCacheableObserver

(

)

Definition at line 116 of file EnzdesCacheableObserver.cc.

Member Function Documentation

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::attach_impl ( core::pose::Pose &  pose)

protectedvirtual

attach to Pose/Conformation

Implements core::pose::datacache::CacheableObserver.

Definition at line 135 of file EnzdesCacheableObserver.cc.

References core::conformation::Conformation::attach_length_obs(), core::pose::Pose::conformation(), length_event_link_, and on_length_change().

core::pose::datacache::CacheableObserverOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::clone ( )

virtual

clone this object

Warning

Subject (represented by Link/pointer) is not copied!

Implements core::pose::datacache::CacheableObserver.

Definition at line 119 of file EnzdesCacheableObserver.cc.

References EnzdesCacheableObserver().

Referenced by set_rigid_body_confs_for_lig().

core::pose::datacache::CacheableObserverOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::create ( )

virtual

create a new instance of this object

Implements core::pose::datacache::CacheableObserver.

Definition at line 125 of file EnzdesCacheableObserver.cc.

References EnzdesCacheableObserver().

toolbox::match_enzdes_util::EnzdesCstCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::cst_cache

(

)

Definition at line 182 of file EnzdesCacheableObserver.cc.

References cst_cache_.

Referenced by set_cst_cache().

toolbox::match_enzdes_util::EnzdesCstCacheCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::cst_cache

(

)

const

Definition at line 188 of file EnzdesCacheableObserver.cc.

References cst_cache_.

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::detach_impl ( )

protectedvirtual

detach from Pose/Conformation

Implements core::pose::datacache::CacheableObserver.

Definition at line 142 of file EnzdesCacheableObserver.cc.

References length_event_link_.

EnzdesLoopsFileCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::enzdes_loops_file

(

)

const

Definition at line 248 of file EnzdesCacheableObserver.cc.

References enz_loops_file_.

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::erase_rigid_body_confs_for_lig

(

core::Size

seqpos)

Definition at line 219 of file EnzdesCacheableObserver.cc.

References lig_rigid_body_confs_.

Referenced by set_rigid_body_confs_for_lig().

EnzdesSeqRecoveryCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::get_seq_recovery_cache

(

)

Definition at line 226 of file EnzdesCacheableObserver.cc.

References seq_recovery_cache_.

EnzdesSeqRecoveryCacheCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::get_seq_recovery_cache

(

)

const

Definition at line 230 of file EnzdesCacheableObserver.cc.

References seq_recovery_cache_.

bool protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::is_attached ( ) const

virtual

is this observer attached to a Pose/Conformation?

Implements core::pose::datacache::CacheableObserver.

Definition at line 131 of file EnzdesCacheableObserver.cc.

References length_event_link_.

std::map< core::Size, utility::vector1< core::conformation::ResidueCOP > > const & protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::lig_rigid_body_confs

(

)

const

Definition at line 194 of file EnzdesCacheableObserver.cc.

References lig_rigid_body_confs_.

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::on_length_change ( core::conformation::signals::LengthEvent const &  event)

protected

Definition at line 147 of file EnzdesCacheableObserver.cc.

References cst_cache_, favor_native_constraints_, core::conformation::signals::LengthEvent::INVALIDATE, seq_recovery_cache_, and core::conformation::signals::LengthEvent::tag.

Referenced by attach_impl().

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::remove_favor_native_constraints

(

core::pose::Pose &

pose)

Definition at line 326 of file EnzdesCacheableObserver.cc.

References favor_native_constraints_, core::pose::Pose::remove_constraints(), and protocols::toolbox::match_enzdes_util::tr().

Referenced by setup_favor_native_constraints().

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_cst_cache

(

toolbox::match_enzdes_util::EnzdesCstCacheOP

cst_cache)

Definition at line 175 of file EnzdesCacheableObserver.cc.

References cst_cache(), and cst_cache_.

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_enzdes_loops_file

(

EnzdesLoopsFileCOP

loopfile_in)

Definition at line 241 of file EnzdesCacheableObserver.cc.

References enz_loops_file_.

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_rigid_body_confs_for_lig	(	core::Size	seqpos,
		utility::vector1< core::conformation::ResidueCOP > const &	rg_confs
	)

Definition at line 200 of file EnzdesCacheableObserver.cc.

References clone(), erase_rigid_body_confs_for_lig(), lig_rigid_body_confs_, and core::scoring::pair.

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::set_seq_recovery_cache

(

EnzdesSeqRecoveryCacheOP

seq_recovery_cache)

Definition at line 234 of file EnzdesCacheableObserver.cc.

References seq_recovery_cache_.

void protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::setup_favor_native_constraints	(	core::pose::Pose &	pose,
		core::pack::task::PackerTaskCOP	task,
		core::pose::Pose const &	native_pose
	)

Definition at line 255 of file EnzdesCacheableObserver.cc.

References core::pose::Pose::add_constraint(), core::pose::Pose::add_constraints(), core::sequence::end, favor_native_constraints_, protocols::abinitio::filename(), remove_favor_native_constraints(), core::pose::Pose::total_residue(), and protocols::toolbox::match_enzdes_util::tr().

Member Data Documentation

toolbox::match_enzdes_util::EnzdesCstCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::cst_cache_

private

Definition at line 153 of file EnzdesCacheableObserver.hh.

Referenced by cst_cache(), EnzdesCacheableObserver(), on_length_change(), and set_cst_cache().

EnzdesLoopsFileCOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::enz_loops_file_

private

Definition at line 161 of file EnzdesCacheableObserver.hh.

Referenced by enzdes_loops_file(), and set_enzdes_loops_file().

core::scoring::constraints::ConstraintCOPs protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::favor_native_constraints_

private

Definition at line 158 of file EnzdesCacheableObserver.hh.

Referenced by EnzdesCacheableObserver(), on_length_change(), remove_favor_native_constraints(), and setup_favor_native_constraints().

utility::signals::Link protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::length_event_link_

private

Definition at line 167 of file EnzdesCacheableObserver.hh.

Referenced by attach_impl(), detach_impl(), and is_attached().

std::map< core::Size, utility::vector1< core::conformation::ResidueCOP > > protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::lig_rigid_body_confs_

private

Definition at line 165 of file EnzdesCacheableObserver.hh.

Referenced by EnzdesCacheableObserver(), erase_rigid_body_confs_for_lig(), lig_rigid_body_confs(), and set_rigid_body_confs_for_lig().

EnzdesSeqRecoveryCacheOP protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver::seq_recovery_cache_

private

Definition at line 155 of file EnzdesCacheableObserver.hh.

Referenced by EnzdesCacheableObserver(), get_seq_recovery_cache(), on_length_change(), and set_seq_recovery_cache().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/match_enzdes_util/EnzdesCacheableObserver.hh
• src/protocols/toolbox/match_enzdes_util/EnzdesCacheableObserver.cc