core::import_pose::pose_stream::ExtendedPoseInputStream Class Reference

#include <ExtendedPoseInputStream.hh>

Inheritance diagram for core::import_pose::pose_stream::ExtendedPoseInputStream:

Collaboration diagram for core::import_pose::pose_stream::ExtendedPoseInputStream:

Public Member Functions
	ExtendedPoseInputStream (std::string sequence, Size ntimes)
	~ExtendedPoseInputStream ()
virtual bool	has_another_pose ()
virtual void	reset ()
virtual void	fill_pose (core::pose::Pose &pose, core::chemical::ResidueTypeSet const &residue_set)
virtual void	fill_pose (core::pose::Pose &)
Public Member Functions inherited from core::import_pose::pose_stream::PoseInputStream
	PoseInputStream ()
virtual	~PoseInputStream ()
virtual utility::vector1 < core::pose::Pose >	get_all_poses (core::chemical::ResidueTypeSet const &residue_set)
void	preprocess_pose (core::pose::Pose &pose)
	Perform common operations on a Pose dependent on command-line options before finishing fill_pose. This includes optimizing hydrogens, adding constraints, and finding disulfides. This should be called in the fill_pose method of derived classes. More...

Private Attributes
std::string	seq_
Size	ntimes_
Size	current_n_

Detailed Description

Definition at line 34 of file ExtendedPoseInputStream.hh.

Constructor & Destructor Documentation

core::import_pose::pose_stream::ExtendedPoseInputStream::ExtendedPoseInputStream ( std::string  sequence, Size  ntimes  )

inline

Definition at line 37 of file ExtendedPoseInputStream.hh.

core::import_pose::pose_stream::ExtendedPoseInputStream::~ExtendedPoseInputStream ( )

inline

Definition at line 39 of file ExtendedPoseInputStream.hh.

Member Function Documentation

void core::import_pose::pose_stream::ExtendedPoseInputStream::fill_pose ( core::pose::Pose &  pose, core::chemical::ResidueTypeSet const &  residue_set  )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 45 of file ExtendedPoseInputStream.cc.

References current_n_, has_another_pose(), core::pose::make_pose_from_sequence(), seq_, core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), core::pose::Pose::set_psi(), and core::pose::Pose::total_residue().

void core::import_pose::pose_stream::ExtendedPoseInputStream::fill_pose ( core::pose::Pose &  )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 71 of file ExtendedPoseInputStream.cc.

bool core::import_pose::pose_stream::ExtendedPoseInputStream::has_another_pose ( )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 37 of file ExtendedPoseInputStream.cc.

References current_n_, and ntimes_.

Referenced by fill_pose().

void core::import_pose::pose_stream::ExtendedPoseInputStream::reset ( )

virtual

Implements core::import_pose::pose_stream::PoseInputStream.

Definition at line 41 of file ExtendedPoseInputStream.cc.

References current_n_.

Member Data Documentation

Size core::import_pose::pose_stream::ExtendedPoseInputStream::current_n_

private

Definition at line 53 of file ExtendedPoseInputStream.hh.

Referenced by fill_pose(), has_another_pose(), and reset().

Size core::import_pose::pose_stream::ExtendedPoseInputStream::ntimes_

private

Definition at line 53 of file ExtendedPoseInputStream.hh.

Referenced by has_another_pose().

std::string core::import_pose::pose_stream::ExtendedPoseInputStream::seq_

private

Definition at line 52 of file ExtendedPoseInputStream.hh.

Referenced by fill_pose().

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The documentation for this class was generated from the following files:

• src/core/import_pose/pose_stream/ExtendedPoseInputStream.hh
• src/core/import_pose/pose_stream/ExtendedPoseInputStream.cc