RelativeSegmentFilter.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
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/// @file protocols/protein_interface_design/filters/RelativeSegmentFilter.hh
/// @author Sarel Fleishman (sarelf@u.washington.edu)

#ifndef INCLUDED_protocols_protein_interface_design_filters_RelativeSegmentFilter_hh
#define INCLUDED_protocols_protein_interface_design_filters_RelativeSegmentFilter_hh


// Project Headers
#include <core/pose/Pose.fwd.hh>
#include <core/types.hh>
#include <protocols/filters/Filter.hh>
#include <utility/tag/Tag.fwd.hh>
#include <protocols/moves/DataMap.fwd.hh>
#include <protocols/moves/Mover.fwd.hh>

namespace protocols {
namespace protein_interface_design {
namespace filters {

using protocols::filters::Filter;
using protocols::filters::FilterOP;
using protocols::filters::Filters_map;

///@brief returns the residues aligned to a segment on the input pdb to the source pdb
class RelativeSegmentFilter : public Filter
{
public:
  typedef core::Real Real;
  typedef core::Size Size;
public :
  RelativeSegmentFilter() : Filter( "RelativeSegment" ) {}
  bool apply( core::pose::Pose const & pose ) const;
  FilterOP clone() const {
    return new RelativeSegmentFilter( *this );
  }
  FilterOP fresh_instance() const{
    return new RelativeSegmentFilter();
  }

  void report( std::ostream & out, core::pose::Pose const & pose ) const;
  core::Real report_sm( core::pose::Pose const & pose ) const;
  virtual ~RelativeSegmentFilter();
  void parse_my_tag( utility::tag::TagPtr const tag, protocols::moves::DataMap &, Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const & );
  std::string source_pose() const { return source_pose_; }
  void source_pose( std::string const s ){ source_pose_ = s; }
  core::Size start_res() const{ return start_res_; }
  void start_res( core::Size const s ){ start_res_ = s;}
  core::Size stop_res() const{ return stop_res_; }
  void stop_res( core::Size const s ){ stop_res_ = s; }
private:
  std::string source_pose_;
  core::Size start_res_, stop_res_;
};

}
} // protein_interface_design
} // devel


#endif /*INCLUDED_DOCK_DESIGN_FILTERS_H_*/