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core::scoring::rna::RNA_TorsionPotential Class Reference

#include <RNA_TorsionPotential.hh>

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Public Member Functions

 RNA_TorsionPotential ()
 
virtual ~RNA_TorsionPotential ()
 
Real eval_intrares_energy (core::conformation::Residue const &rsd, pose::Pose const &pose) const
 
Real residue_pair_energy (core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, pose::Pose const &pose) const
 
void eval_atom_derivative (id::AtomID const &id, pose::Pose const &pose, EnergyMap const &weights, Vector &F1, Vector &F2) const
 

Private Member Functions

bool check_intra_residue (id::TorsionID const &torsion_id, pose::Pose const &pose, Size const seqpos) const
 
void init_potentials_from_rna_torsion_database_files ()
 
void initialize_potential_from_file (core::scoring::constraints::FuncOP &func, std::string const &filename)
 
void init_fade_functions ()
 
bool Should_score_torsion (core::pose::Pose const &pose, core::id::TorsionID const &torsion_id) const
 
bool get_f1_f2 (core::id::TorsionID const &torsion_id, core::pose::Pose const &pose, core::id::AtomID const &id, Vector &f1, Vector &f2) const
 
void Output_boolean (std::string const &tag, bool boolean) const
 
bool Is_cutpoint_closed_atom (core::conformation::Residue const &rsd, core::id::AtomID const &id) const
 
void print_torsion_info (core::pose::Pose const &pose, id::TorsionID const &torsion_id) const
 
bool Is_cutpoint_closed_torsion (core::pose::Pose const &pose, core::id::TorsionID const &torsion_id) const
 

Private Attributes

std::string path_to_torsion_files_
 
bool const rna_tight_torsions_
 
Real const delta_fade_
 
Real const alpha_fade_
 
core::scoring::constraints::FuncOP alpha_potential_
 
core::scoring::constraints::FuncOP beta_potential_
 
core::scoring::constraints::FuncOP gamma_potential_
 
core::scoring::constraints::FuncOP delta_north_potential_
 
core::scoring::constraints::FuncOP delta_south_potential_
 
core::scoring::constraints::FuncOP epsilon_north_potential_
 
core::scoring::constraints::FuncOP epsilon_south_potential_
 
core::scoring::constraints::FuncOP zeta_alpha_sc_minus_potential_
 
core::scoring::constraints::FuncOP zeta_alpha_sc_plus_potential_
 
core::scoring::constraints::FuncOP zeta_alpha_ap_potential_
 
core::scoring::constraints::FuncOP nu2_north_potential_
 
core::scoring::constraints::FuncOP nu2_south_potential_
 
core::scoring::constraints::FuncOP nu1_north_potential_
 
core::scoring::constraints::FuncOP nu1_south_potential_
 
core::scoring::constraints::FuncOP chi_north_potential_others_
 
core::scoring::constraints::FuncOP chi_south_potential_others_
 
core::scoring::constraints::FuncOP chi_north_potential_guanosine_
 
core::scoring::constraints::FuncOP chi_south_potential_guanosine_
 
core::scoring::constraints::FuncOP chi_purine_north_potential_
 
core::scoring::constraints::FuncOP chi_purine_south_potential_
 
core::scoring::constraints::FuncOP chi_pyrimidine_north_potential_
 
core::scoring::constraints::FuncOP chi_pyrimidine_south_potential_
 
core::scoring::constraints::FuncOP o2h_north_potential_
 
core::scoring::constraints::FuncOP o2h_south_potential_
 
core::scoring::constraints::FuncOP fade_delta_north_
 
core::scoring::constraints::FuncOP fade_delta_south_
 
core::scoring::constraints::FuncOP fade_alpha_sc_minus_
 
core::scoring::constraints::FuncOP fade_alpha_sc_plus_
 
core::scoring::constraints::SumFuncOP fade_alpha_ap_
 
bool const skip_chainbreak_torsions_
 
bool const verbose_
 
bool use_new_potential_
 
bool const use_2prime_OH_potential_
 

Detailed Description

Definition at line 45 of file RNA_TorsionPotential.hh.

Constructor & Destructor Documentation

core::scoring::rna::RNA_TorsionPotential::RNA_TorsionPotential ( )

Definition at line 115 of file RNA_TorsionPotential.cc.

References protocols::fldsgn::topology::compare(), init_fade_functions(), init_potentials_from_rna_torsion_database_files(), path_to_torsion_files_, and use_new_potential_.

core::scoring::rna::RNA_TorsionPotential::~RNA_TorsionPotential ( )
virtual

Definition at line 113 of file RNA_TorsionPotential.cc.

Member Function Documentation

bool core::scoring::rna::RNA_TorsionPotential::check_intra_residue ( id::TorsionID const &  torsion_id,
pose::Pose const &  pose,
Size const  seqpos 
) const
private

Definition at line 535 of file RNA_TorsionPotential.cc.

References core::pose::Pose::conformation(), core::conformation::Conformation::get_torsion_angle_atom_ids(), and core::id::AtomID::rsd().

void core::scoring::rna::RNA_TorsionPotential::eval_atom_derivative ( id::AtomID const &  id,
pose::Pose const &  pose,
EnergyMap const &  weights,
Vector &  F1,
Vector &  F2 
) const

Definition at line 345 of file RNA_TorsionPotential.cc.

References core::scoring::rna::ALPHA, alpha_potential_, core::id::BB, core::scoring::rna::BETA, beta_potential_, core::scoring::rna::CHI, core::id::CHI, chi_north_potential_guanosine_, chi_north_potential_others_, chi_purine_north_potential_, chi_purine_south_potential_, chi_pyrimidine_north_potential_, chi_pyrimidine_south_potential_, chi_south_potential_guanosine_, chi_south_potential_others_, core::scoring::rna::DELTA, delta_north_potential_, delta_south_potential_, core::scoring::rna::EPSILON, epsilon_north_potential_, epsilon_south_potential_, fade_alpha_ap_, fade_alpha_sc_minus_, fade_alpha_sc_plus_, fade_delta_north_, fade_delta_south_, core::scoring::rna::GAMMA, gamma_potential_, get_f1_f2(), core::chemical::ResidueType::is_RNA(), core::conformation::Residue::is_RNA(), core::conformation::Residue::mainchain_torsion(), core::chemical::na_rad, core::chemical::na_rgu, core::scoring::rna::NU1, nu1_north_potential_, nu1_south_potential_, core::scoring::rna::NU2, nu2_north_potential_, nu2_south_potential_, core::scoring::rna::NUM_RNA_MAINCHAIN_TORSIONS(), core::scoring::rna::O2H, o2h_north_potential_, o2h_south_potential_, core::pose::Pose::residue(), core::pose::Pose::residue_type(), core::scoring::rna_torsion, core::pose::Pose::total_residue(), use_2prime_OH_potential_, use_new_potential_, core::scoring::rna::ZETA, zeta_alpha_ap_potential_, zeta_alpha_sc_minus_potential_, and zeta_alpha_sc_plus_potential_.

Referenced by core::scoring::rna::RNA_TorsionEnergy::eval_atom_derivative().

Real core::scoring::rna::RNA_TorsionPotential::eval_intrares_energy ( core::conformation::Residue const &  rsd,
pose::Pose const &  pose 
) const

Definition at line 159 of file RNA_TorsionPotential.cc.

References core::conformation::Residue::aa(), core::id::BB, core::scoring::rna::BETA, beta_potential_, core::scoring::rna::CHI, core::id::CHI, core::conformation::Residue::chi(), chi_north_potential_guanosine_, chi_north_potential_others_, chi_purine_north_potential_, chi_purine_south_potential_, chi_pyrimidine_north_potential_, chi_pyrimidine_south_potential_, chi_south_potential_guanosine_, chi_south_potential_others_, core::scoring::rna::DELTA, delta_north_potential_, delta_south_potential_, fade_delta_north_, fade_delta_south_, core::scoring::rna::GAMMA, gamma_potential_, core::conformation::Residue::is_RNA(), core::conformation::Residue::mainchain_torsion(), core::chemical::na_rad, core::chemical::na_rgu, core::scoring::rna::NU1, nu1_north_potential_, nu1_south_potential_, core::scoring::rna::NU2, nu2_north_potential_, nu2_south_potential_, core::scoring::rna::NUM_RNA_MAINCHAIN_TORSIONS(), core::scoring::rna::O2H, o2h_north_potential_, o2h_south_potential_, core::conformation::Residue::seqpos(), Should_score_torsion(), use_2prime_OH_potential_, use_new_potential_, and verbose_.

Referenced by core::scoring::rna::RNA_TorsionEnergy::eval_intrares_energy().

bool core::scoring::rna::RNA_TorsionPotential::get_f1_f2 ( core::id::TorsionID const &  torsion_id,
core::pose::Pose const &  pose,
core::id::AtomID const &  id,
Vector &  f1,
Vector &  f2 
) const
private

Definition at line 305 of file RNA_TorsionPotential.cc.

References core::pose::Pose::conformation(), core::pose::Pose::residue_type(), core::id::TorsionID::rsd(), Should_score_torsion(), core::scoring::tr(), and verbose_.

Referenced by eval_atom_derivative().

void core::scoring::rna::RNA_TorsionPotential::init_fade_functions ( )
private

Definition at line 605 of file RNA_TorsionPotential.cc.

References alpha_fade_, core::scoring::rna::RNA_FittedTorsionInfo::delta_cutoff(), delta_fade_, fade_alpha_ap_, fade_alpha_sc_minus_, fade_alpha_sc_plus_, fade_delta_north_, and fade_delta_south_.

Referenced by RNA_TorsionPotential().

void core::scoring::rna::RNA_TorsionPotential::init_potentials_from_rna_torsion_database_files ( )
private

Definition at line 552 of file RNA_TorsionPotential.cc.

References alpha_potential_, beta_potential_, chi_north_potential_guanosine_, chi_north_potential_others_, chi_purine_north_potential_, chi_purine_south_potential_, chi_pyrimidine_north_potential_, chi_pyrimidine_south_potential_, chi_south_potential_guanosine_, chi_south_potential_others_, delta_north_potential_, delta_south_potential_, epsilon_north_potential_, epsilon_south_potential_, gamma_potential_, initialize_potential_from_file(), nu1_north_potential_, nu1_south_potential_, nu2_north_potential_, nu2_south_potential_, o2h_north_potential_, o2h_south_potential_, use_new_potential_, zeta_alpha_ap_potential_, zeta_alpha_sc_minus_potential_, and zeta_alpha_sc_plus_potential_.

Referenced by RNA_TorsionPotential().

void core::scoring::rna::RNA_TorsionPotential::initialize_potential_from_file ( core::scoring::constraints::FuncOP &  func,
std::string const &  filename 
)
private

Definition at line 588 of file RNA_TorsionPotential.cc.

References protocols::swa::rna::file_exists(), and path_to_torsion_files_.

Referenced by init_potentials_from_rna_torsion_database_files().

bool core::scoring::rna::RNA_TorsionPotential::Is_cutpoint_closed_atom ( core::conformation::Residue const &  rsd,
core::id::AtomID const &  id 
) const
private

Definition at line 670 of file RNA_TorsionPotential.cc.

References core::chemical::ResidueType::atom_name(), and core::conformation::Residue::type().

Referenced by Should_score_torsion().

bool core::scoring::rna::RNA_TorsionPotential::Is_cutpoint_closed_torsion ( core::pose::Pose const &  pose,
core::id::TorsionID const &  torsion_id 
) const
private

Definition at line 682 of file RNA_TorsionPotential.cc.

References core::scoring::rna::ALPHA, core::id::BB, core::scoring::rna::BETA, core::chemical::CUTPOINT_LOWER, core::chemical::CUTPOINT_UPPER, core::scoring::rna::DELTA, core::scoring::rna::EPSILON, core::scoring::rna::GAMMA, core::conformation::Residue::has_variant_type(), core::pose::Pose::residue(), core::id::TorsionID::rsd(), core::id::TorsionID::torsion(), core::pose::Pose::total_residue(), core::id::TorsionID::type(), and core::scoring::rna::ZETA.

Referenced by Should_score_torsion().

void core::scoring::rna::RNA_TorsionPotential::Output_boolean ( std::string const &  tag,
bool  boolean 
) const
private

Definition at line 656 of file RNA_TorsionPotential.cc.

References protocols::comparative_modeling::features::A.

Referenced by Should_score_torsion().

void core::scoring::rna::RNA_TorsionPotential::print_torsion_info ( core::pose::Pose const &  pose,
id::TorsionID const &  torsion_id 
) const
private

Definition at line 725 of file RNA_TorsionPotential.cc.

References core::chemical::ResidueType::atom_name(), core::conformation::Residue::atom_type(), core::conformation::Residue::atom_type_index(), core::conformation::Residue::atomic_charge(), core::id::AtomID::atomno(), core::pose::Pose::conformation(), core::conformation::Conformation::get_torsion_angle_atom_ids(), core::pose::Pose::residue(), core::id::AtomID::rsd(), core::scoring::tr(), and core::conformation::Residue::type().

Referenced by Should_score_torsion().

Real core::scoring::rna::RNA_TorsionPotential::residue_pair_energy ( core::conformation::Residue const &  rsd1,
core::conformation::Residue const &  rsd2,
pose::Pose const &  pose 
) const

Definition at line 247 of file RNA_TorsionPotential.cc.

References core::scoring::rna::ALPHA, alpha_potential_, core::id::BB, core::scoring::rna::DELTA, core::scoring::rna::EPSILON, epsilon_north_potential_, epsilon_south_potential_, fade_alpha_ap_, fade_alpha_sc_minus_, fade_alpha_sc_plus_, fade_delta_north_, fade_delta_south_, core::conformation::Residue::is_RNA(), core::conformation::Residue::mainchain_torsion(), core::conformation::Residue::seqpos(), Should_score_torsion(), verbose_, core::scoring::rna::ZETA, zeta_alpha_ap_potential_, zeta_alpha_sc_minus_potential_, and zeta_alpha_sc_plus_potential_.

Referenced by core::scoring::rna::RNA_TorsionEnergy::residue_pair_energy().

bool core::scoring::rna::RNA_TorsionPotential::Should_score_torsion ( core::pose::Pose const &  pose,
core::id::TorsionID const &  torsion_id 
) const
private

Definition at line 757 of file RNA_TorsionPotential.cc.

References core::id::AtomID::atomno(), core::pose::Pose::conformation(), core::conformation::Conformation::get_torsion_angle_atom_ids(), Is_cutpoint_closed_atom(), Is_cutpoint_closed_torsion(), core::conformation::Residue::is_RNA(), core::scoring::rna::is_rna_chainbreak(), core::conformation::Residue::is_virtual(), Output_boolean(), print_torsion_info(), core::pose::Pose::residue(), core::id::AtomID::rsd(), core::conformation::Residue::seqpos(), skip_chainbreak_torsions_, and verbose_.

Referenced by eval_intrares_energy(), get_f1_f2(), and residue_pair_energy().

Member Data Documentation

Real const core::scoring::rna::RNA_TorsionPotential::alpha_fade_
private

Definition at line 119 of file RNA_TorsionPotential.hh.

Referenced by init_fade_functions().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::alpha_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::beta_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_north_potential_guanosine_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_north_potential_others_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_purine_north_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_purine_south_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_pyrimidine_north_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_pyrimidine_south_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_south_potential_guanosine_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::chi_south_potential_others_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

Real const core::scoring::rna::RNA_TorsionPotential::delta_fade_
private

Definition at line 118 of file RNA_TorsionPotential.hh.

Referenced by init_fade_functions().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::delta_north_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::delta_south_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::epsilon_north_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::epsilon_south_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::constraints::SumFuncOP core::scoring::rna::RNA_TorsionPotential::fade_alpha_ap_
private

Definition at line 130 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_fade_functions(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_alpha_sc_minus_
private

Definition at line 129 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_fade_functions(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_alpha_sc_plus_
private

Definition at line 129 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_fade_functions(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_delta_north_
private

Definition at line 128 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_fade_functions(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::fade_delta_south_
private

Definition at line 128 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_fade_functions(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::gamma_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::nu1_north_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::nu1_south_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::nu2_north_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::nu2_south_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::o2h_north_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::o2h_south_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), and init_potentials_from_rna_torsion_database_files().

std::string core::scoring::rna::RNA_TorsionPotential::path_to_torsion_files_
private

Definition at line 114 of file RNA_TorsionPotential.hh.

Referenced by initialize_potential_from_file(), and RNA_TorsionPotential().

bool const core::scoring::rna::RNA_TorsionPotential::rna_tight_torsions_
private

Definition at line 117 of file RNA_TorsionPotential.hh.

bool const core::scoring::rna::RNA_TorsionPotential::skip_chainbreak_torsions_
private

Definition at line 132 of file RNA_TorsionPotential.hh.

Referenced by Should_score_torsion().

bool const core::scoring::rna::RNA_TorsionPotential::use_2prime_OH_potential_
private

Definition at line 135 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), and eval_intrares_energy().

bool core::scoring::rna::RNA_TorsionPotential::use_new_potential_
private

Definition at line 134 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), eval_intrares_energy(), init_potentials_from_rna_torsion_database_files(), and RNA_TorsionPotential().

bool const core::scoring::rna::RNA_TorsionPotential::verbose_
private

Definition at line 133 of file RNA_TorsionPotential.hh.

Referenced by eval_intrares_energy(), get_f1_f2(), residue_pair_energy(), and Should_score_torsion().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::zeta_alpha_ap_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::zeta_alpha_sc_minus_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

core::scoring::constraints::FuncOP core::scoring::rna::RNA_TorsionPotential::zeta_alpha_sc_plus_potential_
private

Definition at line 121 of file RNA_TorsionPotential.hh.

Referenced by eval_atom_derivative(), init_potentials_from_rna_torsion_database_files(), and residue_pair_energy().

The documentation for this class was generated from the following files:
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