#include <InterlockingAromaFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::InterlockingAromaFilter:

Collaboration diagram for protocols::fldsgn::filters::InterlockingAromaFilter:

Public Types
typedef protocols::filters::Filter	Super

typedef protocols::filters::Filter	Filter

typedef protocols::filters::FilterOP	FilterOP

typedef core::Real	Real

typedef core::pose::Pose	Pose

typedef std::string	String

typedef protocols::fldsgn::topology::SS_Info2_COP	SS_Info2_COP

typedef utility::tag::TagPtr	TagPtr

typedef protocols::filters::Filters_map	Filters_map

typedef protocols::moves::DataMap	DataMap

typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	InterlockingAromaFilter ()

	InterlockingAromaFilter (String const &type)

	InterlockingAromaFilter (InterlockingAromaFilter const &rval)

virtual	~InterlockingAromaFilter ()

virtual FilterOP	clone () const

virtual FilterOP	fresh_instance () const

void	filter_value (Real const value)

void	contact_distance (Real const value)

void	verbose (bool const b)

virtual std::string	name () const

virtual void	parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &pose)
	parse xml More...

virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

virtual Real	report_sm (Pose const &pose) const
	used to report filter internals through a score or silent file More...

virtual void	report (std::ostream &out, Pose const &pose) const
	used to report score More...

Real	compute (Pose const &pose) const
	compute this filter More...

bool	compute (Size const &res, Pose const &pose, SS_Info2_COP const ssinfo) const
	compute this filter for a give residue More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	filter_value_

Real	contact_dist2_

String	input_ss_

bool	verbose_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 47 of file InterlockingAromaFilter.hh.

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::fldsgn::filters::InterlockingAromaFilter::DataMap

Definition at line 60 of file InterlockingAromaFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::InterlockingAromaFilter::Filter

Definition at line 51 of file InterlockingAromaFilter.hh.

typedef protocols::filters::FilterOP protocols::fldsgn::filters::InterlockingAromaFilter::FilterOP

Definition at line 52 of file InterlockingAromaFilter.hh.

typedef protocols::filters::Filters_map protocols::fldsgn::filters::InterlockingAromaFilter::Filters_map

Definition at line 59 of file InterlockingAromaFilter.hh.

typedef protocols::moves::Movers_map protocols::fldsgn::filters::InterlockingAromaFilter::Movers_map

Definition at line 61 of file InterlockingAromaFilter.hh.

typedef core::pose::Pose protocols::fldsgn::filters::InterlockingAromaFilter::Pose

Definition at line 54 of file InterlockingAromaFilter.hh.

typedef core::Real protocols::fldsgn::filters::InterlockingAromaFilter::Real

Definition at line 53 of file InterlockingAromaFilter.hh.

typedef protocols::fldsgn::topology::SS_Info2_COP protocols::fldsgn::filters::InterlockingAromaFilter::SS_Info2_COP

Definition at line 56 of file InterlockingAromaFilter.hh.

typedef std::string protocols::fldsgn::filters::InterlockingAromaFilter::String

Definition at line 55 of file InterlockingAromaFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::InterlockingAromaFilter::Super

Definition at line 50 of file InterlockingAromaFilter.hh.

typedef utility::tag::TagPtr protocols::fldsgn::filters::InterlockingAromaFilter::TagPtr

Definition at line 58 of file InterlockingAromaFilter.hh.

Constructor & Destructor Documentation

protocols::fldsgn::filters::InterlockingAromaFilter::InterlockingAromaFilter ( )

Definition at line 49 of file InterlockingAromaFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::InterlockingAromaFilter::InterlockingAromaFilter ( String const & type)

Definition at line 59 of file InterlockingAromaFilter.cc.

protocols::fldsgn::filters::InterlockingAromaFilter::InterlockingAromaFilter ( InterlockingAromaFilter const & rval)

Definition at line 69 of file InterlockingAromaFilter.cc.

virtual protocols::fldsgn::filters::InterlockingAromaFilter::~InterlockingAromaFilter ( )

inlinevirtual

Definition at line 76 of file InterlockingAromaFilter.hh.

Member Function Documentation

bool protocols::fldsgn::filters::InterlockingAromaFilter::apply ( Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 236 of file InterlockingAromaFilter.cc.

References compute(), filter_value_, and tr().

virtual FilterOP protocols::fldsgn::filters::InterlockingAromaFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 83 of file InterlockingAromaFilter.hh.

References InterlockingAromaFilter().

InterlockingAromaFilter::Real protocols::fldsgn::filters::InterlockingAromaFilter::compute ( Pose const & pose) const

compute this filter

Definition at line 203 of file InterlockingAromaFilter.cc.

References core::pose::Pose::aa(), core::chemical::aa_phe, core::chemical::aa_trp, core::chemical::aa_tyr, input_ss_, and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

bool protocols::fldsgn::filters::InterlockingAromaFilter::compute	(	Size const &	res,
		Pose const &	pose,
		SS_Info2_COP const	ssinfo
	)		const

compute this filter for a give residue

Definition at line 119 of file InterlockingAromaFilter.cc.

References core::pose::Pose::aa(), core::chemical::aa_phe, core::chemical::aa_trp, core::chemical::aa_tyr, core::graph::Node::const_edge_list_end(), contact_dist2_, core::pose::Pose::energies(), core::graph::Edge::get_node(), core::pose::Pose::residue(), core::scoring::Energies::tenA_neighbor_graph(), and tr().

void protocols::fldsgn::filters::InterlockingAromaFilter::contact_distance ( Real const value)

Definition at line 88 of file InterlockingAromaFilter.cc.

References contact_dist2_, and core::scoring::electron_density::square().

Referenced by parse_my_tag().

void protocols::fldsgn::filters::InterlockingAromaFilter::filter_value ( Real const value)

Definition at line 80 of file InterlockingAromaFilter.cc.

References filter_value_.

Referenced by parse_my_tag().

virtual FilterOP protocols::fldsgn::filters::InterlockingAromaFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 86 of file InterlockingAromaFilter.hh.

References InterlockingAromaFilter().

virtual std::string protocols::fldsgn::filters::InterlockingAromaFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Definition at line 106 of file InterlockingAromaFilter.hh.

void protocols::fldsgn::filters::InterlockingAromaFilter::parse_my_tag	(	TagPtr const	tag,
		DataMap &	,
		Filters_map const &	,
		Movers_map const &	,
		Pose const &	pose
	)