protocols::genetic_algorithm::PositionSpecificRandomizer Class Reference

different set of choices at each position in Entity's traits More...

#include <EntityRandomizer.hh>

Inheritance diagram for protocols::genetic_algorithm::PositionSpecificRandomizer:

Collaboration diagram for protocols::genetic_algorithm::PositionSpecificRandomizer:

Public Types
typedef utility::pointer::owning_ptr < PositionSpecificRandomizer >	OP
typedef utility::pointer::owning_ptr < PositionSpecificRandomizer const >	COP
Public Types inherited from protocols::genetic_algorithm::EntityRandomizer
typedef utility::pointer::owning_ptr < EntityRandomizer >	OP
typedef utility::pointer::owning_ptr < EntityRandomizer const >	COP
typedef Entity::OP	EntityOP
typedef Entity::COP	EntityCOP

Public Member Functions
virtual	~PositionSpecificRandomizer ()
virtual void	append_choices (EntityElements const &choices)
virtual void	mutate (Entity &entity)
virtual core::Size	library_size () const
virtual utility::vector1 < EntityElements > const &	choices () const
Public Member Functions inherited from protocols::genetic_algorithm::EntityRandomizer
	EntityRandomizer ()
virtual	~EntityRandomizer ()
virtual EntityOP	random_entity ()
virtual void	crossover (Entity &entity1, Entity &entity2)
	randomly swap [1, N-1] traits between two entities More...
virtual core::Size	entity_length () const
virtual void	set_mutation_rate (core::Real rate)
virtual core::Real	mutation_rate () const
virtual EntityCOP	entity_template () const
virtual void	set_entity_template (EntityCOP entity)

Private Attributes
utility::vector1< EntityElements >	choices_

Additional Inherited Members
Protected Member Functions inherited from protocols::genetic_algorithm::EntityRandomizer
virtual void	set_entity_length (core::Size length)

Detailed Description

different set of choices at each position in Entity's traits

Definition at line 80 of file EntityRandomizer.hh.

Member Typedef Documentation

typedef utility::pointer::owning_ptr< PositionSpecificRandomizer const > protocols::genetic_algorithm::PositionSpecificRandomizer::COP

Definition at line 83 of file EntityRandomizer.hh.

typedef utility::pointer::owning_ptr< PositionSpecificRandomizer > protocols::genetic_algorithm::PositionSpecificRandomizer::OP

Definition at line 82 of file EntityRandomizer.hh.

Constructor & Destructor Documentation

protocols::genetic_algorithm::PositionSpecificRandomizer::~PositionSpecificRandomizer ( )

virtual

Definition at line 52 of file EntityRandomizer.cc.

Member Function Documentation

void protocols::genetic_algorithm::PositionSpecificRandomizer::append_choices ( EntityElements const &  choices)

virtual

Definition at line 133 of file EntityRandomizer.cc.

References choices_, and protocols::genetic_algorithm::EntityRandomizer::set_entity_length().

utility::vector1< EntityElements > const & protocols::genetic_algorithm::PositionSpecificRandomizer::choices ( ) const

virtual

Definition at line 54 of file EntityRandomizer.cc.

References choices_.

core::Size protocols::genetic_algorithm::PositionSpecificRandomizer::library_size ( ) const

virtual

Implements protocols::genetic_algorithm::EntityRandomizer.

Definition at line 156 of file EntityRandomizer.cc.

References choices_, core::sequence::end, and core::io::serialization::size().

void protocols::genetic_algorithm::PositionSpecificRandomizer::mutate ( Entity &  entity)

virtual

Implements protocols::genetic_algorithm::EntityRandomizer.

Definition at line 140 of file EntityRandomizer.cc.

References choices_, core::sequence::end, protocols::genetic_algorithm::EntityRandomizer::mutation_rate(), protocols::genetic_algorithm::Entity::set_traits(), and protocols::genetic_algorithm::Entity::traits().

Member Data Documentation

utility::vector1< EntityElements > protocols::genetic_algorithm::PositionSpecificRandomizer::choices_

private

Definition at line 91 of file EntityRandomizer.hh.

Referenced by append_choices(), choices(), library_size(), and mutate().

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The documentation for this class was generated from the following files:

• src/protocols/genetic_algorithm/EntityRandomizer.hh
• src/protocols/genetic_algorithm/EntityRandomizer.cc