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core::scoring::rna::RNA_FittedTorsionInfo Class Reference

#include <RNA_FittedTorsionInfo.hh>

Inheritance diagram for core::scoring::rna::RNA_FittedTorsionInfo:
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Collaboration diagram for core::scoring::rna::RNA_FittedTorsionInfo:
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Public Member Functions

 RNA_FittedTorsionInfo ()
 
virtual ~RNA_FittedTorsionInfo ()
 
Real delta_cutoff () const
 
Gaussian_parameter_set gaussian_parameter_set_alpha () const
 
Gaussian_parameter_set gaussian_parameter_set_beta () const
 
Gaussian_parameter_set gaussian_parameter_set_gamma () const
 
Gaussian_parameter_set gaussian_parameter_set_delta_north () const
 
Gaussian_parameter_set gaussian_parameter_set_delta_south () const
 
Gaussian_parameter_set gaussian_parameter_set_epsilon_north () const
 
Gaussian_parameter_set gaussian_parameter_set_epsilon_south () const
 
Gaussian_parameter_set gaussian_parameter_set_zeta_alpha_sc_minus () const
 
Gaussian_parameter_set gaussian_parameter_set_zeta_alpha_sc_plus () const
 
Gaussian_parameter_set gaussian_parameter_set_zeta_alpha_ap () const
 
Gaussian_parameter_set gaussian_parameter_set_chi_north () const
 
Gaussian_parameter_set gaussian_parameter_set_chi_south () const
 
Gaussian_parameter_set gaussian_parameter_set_nu2_north () const
 
Gaussian_parameter_set gaussian_parameter_set_nu2_south () const
 
Gaussian_parameter_set gaussian_parameter_set_nu1_north () const
 
Gaussian_parameter_set gaussian_parameter_set_nu1_south () const
 
Real ideal_delta_north () const
 
Real ideal_nu2_north () const
 
Real ideal_nu1_north () const
 
Real ideal_delta_south () const
 
Real ideal_nu2_south () const
 
Real ideal_nu1_south () const
 

Private Member Functions

void init_rna_torsion_gaussian_parameters ()
 

Private Attributes

bool rna_tight_torsions_
 
Gaussian_parameter_set gaussian_parameter_set_alpha_
 
Gaussian_parameter_set gaussian_parameter_set_beta_
 
Gaussian_parameter_set gaussian_parameter_set_gamma_
 
Gaussian_parameter_set gaussian_parameter_set_delta_north_
 
Gaussian_parameter_set gaussian_parameter_set_delta_south_
 
Gaussian_parameter_set gaussian_parameter_set_epsilon_north_
 
Gaussian_parameter_set gaussian_parameter_set_epsilon_south_
 
Gaussian_parameter_set gaussian_parameter_set_zeta_alpha_sc_minus_
 
Gaussian_parameter_set gaussian_parameter_set_zeta_alpha_sc_plus_
 
Gaussian_parameter_set gaussian_parameter_set_zeta_alpha_ap_
 
Gaussian_parameter_set gaussian_parameter_set_chi_north_
 
Gaussian_parameter_set gaussian_parameter_set_chi_south_
 
Gaussian_parameter_set gaussian_parameter_set_nu2_north_
 
Gaussian_parameter_set gaussian_parameter_set_nu2_south_
 
Gaussian_parameter_set gaussian_parameter_set_nu1_north_
 
Gaussian_parameter_set gaussian_parameter_set_nu1_south_
 
Real const DELTA_CUTOFF_
 
Real const ideal_delta_north_
 
Real const ideal_nu2_north_
 
Real const ideal_nu1_north_
 
Real const ideal_delta_south_
 
Real const ideal_nu2_south_
 
Real const ideal_nu1_south_
 

Detailed Description

Definition at line 33 of file RNA_FittedTorsionInfo.hh.

Constructor & Destructor Documentation

core::scoring::rna::RNA_FittedTorsionInfo::RNA_FittedTorsionInfo ( )

Definition at line 39 of file RNA_FittedTorsionInfo.cc.

References init_rna_torsion_gaussian_parameters().

core::scoring::rna::RNA_FittedTorsionInfo::~RNA_FittedTorsionInfo ( )
virtual

Definition at line 54 of file RNA_FittedTorsionInfo.cc.

Member Function Documentation

Real core::scoring::rna::RNA_FittedTorsionInfo::delta_cutoff ( ) const
inline

Definition at line 41 of file RNA_FittedTorsionInfo.hh.

References DELTA_CUTOFF_.

Referenced by core::scoring::rna::RNA_SugarCloseEnergy::add_sugar_ring_closure_constraints(), core::pack::rotamer_set::build_rna_chi_rotamers(), and core::scoring::rna::RNA_TorsionPotential::init_fade_functions().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_alpha ( ) const
inline

Definition at line 43 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_alpha_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_beta ( ) const
inline

Definition at line 44 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_beta_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_north ( ) const
inline

Definition at line 53 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_chi_north_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_south ( ) const
inline

Definition at line 54 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_chi_south_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_north ( ) const
inline

Definition at line 46 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_delta_north_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_south ( ) const
inline

Definition at line 47 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_delta_south_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_north ( ) const
inline

Definition at line 48 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_epsilon_north_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_south ( ) const
inline

Definition at line 49 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_epsilon_south_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_gamma ( ) const
inline

Definition at line 45 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_gamma_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_north ( ) const
inline

Definition at line 57 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_nu1_north_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_south ( ) const
inline

Definition at line 58 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_nu1_south_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_north ( ) const
inline

Definition at line 55 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_nu2_north_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_south ( ) const
inline

Definition at line 56 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_nu2_south_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_ap ( ) const
inline

Definition at line 52 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_zeta_alpha_ap_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_minus ( ) const
inline

Definition at line 50 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_zeta_alpha_sc_minus_.

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_plus ( ) const
inline

Definition at line 51 of file RNA_FittedTorsionInfo.hh.

References gaussian_parameter_set_zeta_alpha_sc_plus_.

Real core::scoring::rna::RNA_FittedTorsionInfo::ideal_delta_north ( ) const
inline

Definition at line 60 of file RNA_FittedTorsionInfo.hh.

References ideal_delta_north_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

Real core::scoring::rna::RNA_FittedTorsionInfo::ideal_delta_south ( ) const
inline

Definition at line 64 of file RNA_FittedTorsionInfo.hh.

References ideal_delta_south_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

Real core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu1_north ( ) const
inline

Definition at line 62 of file RNA_FittedTorsionInfo.hh.

References ideal_nu1_north_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

Real core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu1_south ( ) const
inline

Definition at line 66 of file RNA_FittedTorsionInfo.hh.

References ideal_nu1_south_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

Real core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu2_north ( ) const
inline

Definition at line 61 of file RNA_FittedTorsionInfo.hh.

References ideal_nu2_north_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

Real core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu2_south ( ) const
inline

Definition at line 65 of file RNA_FittedTorsionInfo.hh.

References ideal_nu2_south_.

Referenced by protocols::swa::rna::StepWiseRNA_Base_Sugar_Rotamer::get_next_rotamer().

void core::scoring::rna::RNA_FittedTorsionInfo::init_rna_torsion_gaussian_parameters ( )
private

Definition at line 58 of file RNA_FittedTorsionInfo.cc.

References gaussian_parameter_set_alpha_, gaussian_parameter_set_beta_, gaussian_parameter_set_chi_north_, gaussian_parameter_set_chi_south_, gaussian_parameter_set_delta_north_, gaussian_parameter_set_delta_south_, gaussian_parameter_set_epsilon_north_, gaussian_parameter_set_epsilon_south_, gaussian_parameter_set_gamma_, gaussian_parameter_set_nu1_north_, gaussian_parameter_set_nu1_south_, gaussian_parameter_set_nu2_north_, gaussian_parameter_set_nu2_south_, gaussian_parameter_set_zeta_alpha_ap_, gaussian_parameter_set_zeta_alpha_sc_minus_, gaussian_parameter_set_zeta_alpha_sc_plus_, and rna_tight_torsions_.

Referenced by RNA_FittedTorsionInfo().

Member Data Documentation

Real const core::scoring::rna::RNA_FittedTorsionInfo::DELTA_CUTOFF_
private

Definition at line 93 of file RNA_FittedTorsionInfo.hh.

Referenced by delta_cutoff().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_alpha_
private

Definition at line 76 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_alpha(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_beta_
private

Definition at line 77 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_beta(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_north_
private

Definition at line 86 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_chi_north(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_chi_south_
private

Definition at line 87 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_chi_south(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_north_
private

Definition at line 79 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_delta_north(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_delta_south_
private

Definition at line 80 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_delta_south(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_north_
private

Definition at line 81 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_epsilon_north(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_epsilon_south_
private

Definition at line 82 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_epsilon_south(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_gamma_
private

Definition at line 78 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_gamma(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_north_
private

Definition at line 90 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_nu1_north(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu1_south_
private

Definition at line 91 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_nu1_south(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_north_
private

Definition at line 88 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_nu2_north(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_nu2_south_
private

Definition at line 89 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_nu2_south(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_ap_
private

Definition at line 85 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_zeta_alpha_ap(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_minus_
private

Definition at line 83 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_zeta_alpha_sc_minus(), and init_rna_torsion_gaussian_parameters().

Gaussian_parameter_set core::scoring::rna::RNA_FittedTorsionInfo::gaussian_parameter_set_zeta_alpha_sc_plus_
private

Definition at line 84 of file RNA_FittedTorsionInfo.hh.

Referenced by gaussian_parameter_set_zeta_alpha_sc_plus(), and init_rna_torsion_gaussian_parameters().

Real const core::scoring::rna::RNA_FittedTorsionInfo::ideal_delta_north_
private

Definition at line 95 of file RNA_FittedTorsionInfo.hh.

Referenced by ideal_delta_north().

Real const core::scoring::rna::RNA_FittedTorsionInfo::ideal_delta_south_
private

Definition at line 99 of file RNA_FittedTorsionInfo.hh.

Referenced by ideal_delta_south().

Real const core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu1_north_
private

Definition at line 97 of file RNA_FittedTorsionInfo.hh.

Referenced by ideal_nu1_north().

Real const core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu1_south_
private

Definition at line 101 of file RNA_FittedTorsionInfo.hh.

Referenced by ideal_nu1_south().

Real const core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu2_north_
private

Definition at line 96 of file RNA_FittedTorsionInfo.hh.

Referenced by ideal_nu2_north().

Real const core::scoring::rna::RNA_FittedTorsionInfo::ideal_nu2_south_
private

Definition at line 100 of file RNA_FittedTorsionInfo.hh.

Referenced by ideal_nu2_south().

bool core::scoring::rna::RNA_FittedTorsionInfo::rna_tight_torsions_
private

Definition at line 74 of file RNA_FittedTorsionInfo.hh.

Referenced by init_rna_torsion_gaussian_parameters().

The documentation for this class was generated from the following files:
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