|
Rosetta 3.5
|
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
|
Rosetta 3.5
|
This is the complete list of members for core::scoring::etable::BaseEtableEnergy< Derived >, including all inherited members.
| __pad0__ | core::scoring::etable::BaseEtableEnergy< Derived > | |
| __pad1__ | core::scoring::etable::BaseEtableEnergy< Derived > | |
| atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, AtomPairEnergy &ape) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| atomic_interaction_cutoff() const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| atomic_interaction_cutoff() const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| atomic_interaction_cutoff() const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| BaseEtableEnergy(methods::EnergyMethodCreatorOP creator, Etable const &etable_in, methods::EnergyMethodOptions const &options) | core::scoring::etable::BaseEtableEnergy< Derived > | |
| BaseEtableEnergy(BaseEtableEnergy< Derived > const &) | core::scoring::etable::BaseEtableEnergy< Derived > | |
| BaseEtableEnergy(Etable const &etable_in, methods::EnergyMethodOptions const &options, ScoreType st_atr, ScoreType st_rep, ScoreType st_sol) | core::scoring::etable::BaseEtableEnergy< Derived > | |
| BaseEtableEnergy(Etable const &etable_in, methods::EnergyMethodOptions const &options, ScoreType st_atr, ScoreType st_rep, ScoreType st_sol) | core::scoring::etable::BaseEtableEnergy< Derived > | |
| bump_energy_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| bump_energy_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| bump_energy_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| bump_energy_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| bump_energy_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| bump_energy_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| clone() const =0 | core::scoring::methods::EnergyMethod | pure virtual |
| ContextIndependentTwoBodyEnergy(EnergyMethodCreatorOP) | core::scoring::methods::ContextIndependentTwoBodyEnergy | |
| create_rotamer_trie(conformation::RotamerSetBase const &rotset, pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie(conformation::Residue const &residue, pose::Pose const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie(conformation::RotamerSetBase const &rotset, pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie(conformation::RotamerSetBase const &rotset, pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie_1(conformation::RotamerSetBase const &rotset, Size connection_type) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie_1(conformation::RotamerSetBase const &rotset, Size connection_type) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie_1(conformation::RotamerSetBase const &rotset, Size connection_type) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie_2(conformation::RotamerSetBase const &rotset) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie_2(conformation::RotamerSetBase const &rotset) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| create_rotamer_trie_2(conformation::RotamerSetBase const &rotset) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| defines_intrares_dof_derivatives(pose::Pose const &p) const | core::scoring::methods::TwoBodyEnergy | virtual |
| defines_intrares_energy(EnergyMap const &weights) const =0 | core::scoring::methods::TwoBodyEnergy | pure virtual |
| defines_intrares_energy_for_residue(conformation::Residue const &res) const | core::scoring::methods::TwoBodyEnergy | virtual |
| defines_score_for_residue_pair(conformation::Residue const &res1, conformation::Residue const &res2, bool res_moving_wrt_eachother) const | core::scoring::methods::TwoBodyEnergy | virtual |
| derived_prepare_for_residue_pair(Size const, Size const, pose::Pose const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| derived_prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| derived_prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| determine_crossover_behavior(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| determine_crossover_behavior(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| determine_crossover_behavior(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| divides_backbone_and_sidechain_energetics() const | core::scoring::etable::BaseEtableEnergy< Derived > | inlinevirtual |
| divides_backbone_and_sidechain_energetics() const | core::scoring::etable::BaseEtableEnergy< Derived > | inlinevirtual |
| dljatr_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| dljrep_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| dsolv_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| EnergyMethod(EnergyMethod const &src) | core::scoring::methods::EnergyMethod | |
| etable() const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| etable_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| etable_bins_per_A2 | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &sfxn, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &sfxn, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &sfxn, EnergyMap const &weights, Vector &F1, Vector &F2) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| eval_intrares_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const =0 | core::scoring::methods::TwoBodyEnergy | pure virtual |
| eval_intrares_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| eval_intraresidue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const | core::scoring::methods::TwoBodyEnergy | virtual |
| eval_residue_pair_derivatives(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &, ResSingleMinimizationData const &, ResPairMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &r1_at_derivs, utility::vector1< DerivVectorPair > &r2_at_derivs) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| evaluate_rotamer_background_energy_maps(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< EnergyMap > &emaps) const | core::scoring::methods::ShortRangeTwoBodyEnergy | virtual |
| evaluate_rotamer_intrares_energies(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< core::PackerEnergy > &energies) const | core::scoring::methods::TwoBodyEnergy | virtual |
| evaluate_rotamer_intrares_energy_maps(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< EnergyMap > &emaps) const | core::scoring::methods::TwoBodyEnergy | virtual |
| evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| exclude_DNA_DNA | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| fast_memb_env_energy(conformation::Atom const &atom1, int const attype1, Real &mbenvE) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| get_count_pair_function(Size res1, Size res2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_count_pair_function(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_count_pair_function(Size res1, Size res2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_count_pair_function(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_count_pair_function(Size res1, Size res2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_count_pair_function(conformation::Residue const &res1, conformation::Residue const &res2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_count_pair_function_trie(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| get_count_pair_function_trie(conformation::Residue const &res1, conformation::Residue const &res2, trie::RotamerTrieBaseCOP trie1, trie::RotamerTrieBaseCOP trie2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| get_count_pair_function_trie(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| get_count_pair_function_trie(conformation::Residue const &res1, conformation::Residue const &res2, trie::RotamerTrieBaseCOP trie1, trie::RotamerTrieBaseCOP trie2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| get_count_pair_function_trie(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| get_count_pair_function_trie(conformation::Residue const &res1, conformation::Residue const &res2, trie::RotamerTrieBaseCOP trie1, trie::RotamerTrieBaseCOP trie2, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| get_intrares_countpair(conformation::Residue const &res, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_intrares_countpair(conformation::Residue const &res, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| get_intrares_countpair(conformation::Residue const &res, pose::Pose const &pose, ScoreFunction const &sfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | |
| heavyatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2, DistanceSquared &d2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| heavyatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2, DistanceSquared &d2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| heavyatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| heavyatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| hydrogen_interaction_cutoff2() const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| hydrogen_interaction_cutoff2() const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| hydrogen_interaction_cutoff2() const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| hydrogen_interaction_cutoff2_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| hydrogenatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| hydrogenatom_heavyatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| hydrogenatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| hydrogenatom_hydrogenatom_energy(etrie::EtableAtom const &at1, etrie::EtableAtom const &at2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| indicate_required_context_graphs(utility::vector1< bool > &) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| indicate_required_context_graphs(utility::vector1< bool > &) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| indicate_required_context_graphs(utility::vector1< bool > &) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| interpolate_bins(conformation::Atom const &atom1, conformation::Atom const &atom2, Real &d2, int &disbin, Real &frac) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| interpolate_bins(conformation::Atom const &atom1, conformation::Atom const &atom2, Real &d2, int &disbin, Real &frac) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| interpolate_bins(conformation::Atom const &atom1, conformation::Atom const &atom2, Real &d2, int &disbin, Real &frac) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| ljatr_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| ljrep_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, EnergyMap &emap, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| memb_atom_pair_energy(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| memb_atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| memb_atom_pair_energy_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb, Real &dsq) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| memb_dsolv_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| memb_eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| memb_eval_dE_dR_over_r(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| memb_eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| memb_eval_dE_dR_over_r_(conformation::Atom const &atom1, conformation::Atom const &atom2, EnergyMap const &weights, Vector &f1, Vector &f2) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| memb_solv1_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| memb_solv2_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| method_type() const | core::scoring::methods::ContextIndependentTwoBodyEnergy | virtual |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, Energy &atr, Energy &rep, Energy &solv, Energy &bb) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| pair_energy_H(conformation::Atom const &atom1, conformation::Atom const &atom2, Real weight, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| pair_energy_H_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| pair_energy_H_(conformation::Atom const &atom1, conformation::Atom const &atom2, Real const weight, Real &atr, Real &rep, Real &solv, Real &bb) const | core::scoring::etable::BaseEtableEnergy< Derived > | inlineprotected |
| parent typedef | core::scoring::methods::ContextIndependentTwoBodyEnergy | |
| prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| prepare_for_residue_pair(Size const res1, Size const res2, pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| rep_scoretype() const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| rep_scoretype() const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| rep_scoretype() const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| requires_a_setup_for_derivatives_for_residue_pair_opportunity(pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| requires_a_setup_for_scoring_for_residue_opportunity(pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| requires_a_setup_for_scoring_for_residue_pair_opportunity(pose::Pose const &pose) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| residue_pair_energy_ext(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResPairMinimizationData const &min_data, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| safe_max_dis2 | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| set_scoretypes(ScoreType atr_type, ScoreType rep_type, ScoreType sol_type) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| set_scoretypes(ScoreType atr_type, ScoreType rep_type, ScoreType sol_type) const | core::scoring::etable::BaseEtableEnergy< Derived > | protected |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &, ResSingleMinimizationData &min_data) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_derivatives_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &, ResPairMinimizationData &data_cache) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_minimizing(pose::Pose &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &min_map) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_minimizing(pose::Pose &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &min_map) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_minimizing(pose::Pose &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &min_map) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData &min_data) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_minimizing_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData const &res1_data_cache, ResSingleMinimizationData const &res2_data_cache, ResPairMinimizationData &min_data) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &, ResSingleMinimizationData &min_data) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| setup_for_scoring_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &, ResPairMinimizationData &data_cache) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| ShortRangeTwoBodyEnergy(EnergyMethodCreatorOP) | core::scoring::methods::ShortRangeTwoBodyEnergy | |
| sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| solv1_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| solv2_ | core::scoring::etable::BaseEtableEnergy< Derived > | private |
| st_atr_ | core::scoring::etable::BaseEtableEnergy< Derived > | mutableprivate |
| st_rep_ | core::scoring::etable::BaseEtableEnergy< Derived > | mutableprivate |
| st_sol_ | core::scoring::etable::BaseEtableEnergy< Derived > | mutableprivate |
| sum_energies(Real atr, Real rep, Real solv, Real bb) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| sum_energies(Real atr, Real rep, Real solv, Real bb) const | core::scoring::etable::BaseEtableEnergy< Derived > | inline |
| TwoBodyEnergy(EnergyMethodCreatorOP) | core::scoring::methods::TwoBodyEnergy | |
| update_residue_for_packing(pose::Pose &pose, Size resid) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| update_residue_for_packing(pose::Pose &pose, Size resid) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| update_residue_for_packing(pose::Pose &pose, Size resid) const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| core::scoring::methods::ContextIndependentTwoBodyEnergy::update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| use_extended_intrares_energy_interface() const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| use_extended_residue_pair_energy_interface() const | core::scoring::etable::BaseEtableEnergy< Derived > | virtual |
| version() const =0 | core::scoring::methods::EnergyMethod | pure virtual |
| weights_ | core::scoring::etable::BaseEtableEnergy< Derived > | mutableprivate |
| ~ContextIndependentTwoBodyEnergy() | core::scoring::methods::ContextIndependentTwoBodyEnergy | virtual |
| ~EnergyMethod() | core::scoring::methods::EnergyMethod | virtual |
| ~ShortRangeTwoBodyEnergy() | core::scoring::methods::ShortRangeTwoBodyEnergy | virtual |
| ~TwoBodyEnergy() | core::scoring::methods::TwoBodyEnergy | virtual |
1.8.4