core::io::pdb::PDB_DReaderOptions Class Reference

#include <pdb_dynamic_reader_options.hh>

Inheritance diagram for core::io::pdb::PDB_DReaderOptions:

Collaboration diagram for core::io::pdb::PDB_DReaderOptions:

Public Member Functions
	PDB_DReaderOptions ()
virtual	~PDB_DReaderOptions ()
virtual void	parse_my_tag (utility::tag::TagPtr tag)
virtual std::string	type () const
bool	new_chain_order () const
bool	obey_ENDMDL () const
void	set_new_chain_order (bool new_chain_order)
void	set_obey_ENDMDL (bool obey_ENDMDL)
Public Member Functions inherited from core::io::pdb::FileDataOptions
	FileDataOptions ()
virtual	~FileDataOptions ()
std::string	check_if_residues_are_Ntermini () const
std::string	check_if_residues_are_Ctermini () const
bool	exit_if_missing_heavy_atoms () const
bool	ignore_unrecognized_res () const
bool	ignore_waters () const
bool	ignore_zero_occupancy () const
bool	keep_input_protonation_state () const
bool	preserve_header () const
bool	randomize_missing_coords () const
bool	remember_unrecognized_res () const
bool	remember_unrecognized_water () const
std::string const &	chains_whose_residues_are_separate_chemical_entities () const
void	set_check_if_residues_are_Ntermini (std::string check_if_residues_are_Ntermini)
void	set_check_if_residues_are_Ctermini (std::string check_if_residues_are_Ctermini)
void	set_exit_if_missing_heavy_atoms (bool exit_if_missing_heavy_atoms)
void	set_ignore_unrecognized_res (bool ignore_unrecognized_res)
void	set_ignore_waters (bool ignore_waters)
void	set_ignore_zero_occupancy (bool ignore_zero_occupancy)
void	set_keep_input_protonation_state (bool keep_input_protonation_state)
void	set_preserve_header (bool preserve_header)
void	set_randomize_missing_coords (bool randomize_missing_coords)
void	set_remember_unrecognized_res (bool remember_unrecognized_res)
void	set_remember_unrecognized_water (bool remember_unrecognized_water)
void	set_chains_whose_residues_are_separate_chemical_entities (std::string const &setting)

Private Member Functions
void	init_from_options ()
	Assigns user specified values to primitive members using command line options. More...

Private Attributes
bool	new_chain_order_
bool	obey_ENDMDL_

Detailed Description

Definition at line 32 of file pdb_dynamic_reader_options.hh.

Constructor & Destructor Documentation

core::io::pdb::PDB_DReaderOptions::PDB_DReaderOptions

(

)

Definition at line 32 of file pdb_dynamic_reader_options.cc.

References init_from_options().

core::io::pdb::PDB_DReaderOptions::~PDB_DReaderOptions ( )

virtual

Definition at line 34 of file pdb_dynamic_reader_options.cc.

Member Function Documentation

void core::io::pdb::PDB_DReaderOptions::init_from_options ( )

private

Assigns user specified values to primitive members using command line options.

Definition at line 55 of file pdb_dynamic_reader_options.cc.

References set_new_chain_order(), and set_obey_ENDMDL().

Referenced by PDB_DReaderOptions().

bool core::io::pdb::PDB_DReaderOptions::new_chain_order

(

)

const

Definition at line 47 of file pdb_dynamic_reader_options.cc.

References new_chain_order_.

Referenced by core::io::pdb::PDB_DReader::createFileData(), and set_new_chain_order().

bool core::io::pdb::PDB_DReaderOptions::obey_ENDMDL

(

)

const

Definition at line 48 of file pdb_dynamic_reader_options.cc.

References obey_ENDMDL_.

Referenced by core::io::pdb::PDB_DReader::createFileData(), and set_obey_ENDMDL().

void core::io::pdb::PDB_DReaderOptions::parse_my_tag ( utility::tag::TagPtr  tag)

virtual

Reimplemented from core::io::pdb::FileDataOptions.

Reimplemented in core::import_pose::ImportPoseOptions.

Definition at line 36 of file pdb_dynamic_reader_options.cc.

References core::io::pdb::FileDataOptions::parse_my_tag(), set_new_chain_order(), and set_obey_ENDMDL().

Referenced by core::import_pose::ImportPoseOptions::parse_my_tag().

void core::io::pdb::PDB_DReaderOptions::set_new_chain_order

(

bool

new_chain_order)

Definition at line 51 of file pdb_dynamic_reader_options.cc.

References new_chain_order(), and new_chain_order_.

Referenced by init_from_options(), and parse_my_tag().

void core::io::pdb::PDB_DReaderOptions::set_obey_ENDMDL

(

bool

obey_ENDMDL)

Definition at line 52 of file pdb_dynamic_reader_options.cc.

References obey_ENDMDL(), and obey_ENDMDL_.

Referenced by init_from_options(), and parse_my_tag().

std::string core::io::pdb::PDB_DReaderOptions::type ( ) const

virtual

Reimplemented from core::io::pdb::FileDataOptions.

Reimplemented in core::import_pose::ImportPoseOptions.

Definition at line 44 of file pdb_dynamic_reader_options.cc.

Member Data Documentation

bool core::io::pdb::PDB_DReaderOptions::new_chain_order_

private

Definition at line 58 of file pdb_dynamic_reader_options.hh.

Referenced by new_chain_order(), and set_new_chain_order().

bool core::io::pdb::PDB_DReaderOptions::obey_ENDMDL_

private

Definition at line 59 of file pdb_dynamic_reader_options.hh.

Referenced by obey_ENDMDL(), and set_obey_ENDMDL().

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The documentation for this class was generated from the following files:

• src/core/io/pdb/pdb_dynamic_reader_options.hh
• src/core/io/pdb/pdb_dynamic_reader_options.cc