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TrieCountPair1BC4.hh
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2 // vi: set ts=2 noet:
3 //
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9 
10 /// @file core/scoring/etable/etrie/TrieCountPair1BC4.hh
11 /// @brief
12 /// @author Andrew Leaver-Fay (aleaverfay@gmail.com)
13 
14 #ifndef INCLUDED_core_scoring_etable_etrie_TrieCountPair1BC4_hh
15 #define INCLUDED_core_scoring_etable_etrie_TrieCountPair1BC4_hh
16 
17 // Unit Headers
18 #include <core/scoring/etable/etrie/TrieCountPair1BC4.fwd.hh>
19 
20 // Package Headers
21 #include <core/scoring/trie/TrieCountPairBase.hh>
22 #include <core/scoring/etable/etrie/CountPairData_1_2.fwd.hh>
23 #include <core/scoring/etable/etrie/CountPairData_1_3.fwd.hh>
24 #include <core/scoring/etable/etrie/CountPairDataGeneric.fwd.hh>
25 
26 #include <core/scoring/hbonds/HBondEnergy.fwd.hh>
27 #include <core/scoring/hbonds/hbtrie/HBCPData.fwd.hh>
28 
29 
30 // Project Headers
31 #include <core/scoring/etable/EtableEnergy.fwd.hh>
32 //XRW_B_T1
33 //#include <core/scoring/etable/CoarseEtableEnergy.fwd.hh>
34 //XRW_E_T1
35 #include <core/scoring/hackelec/HackElecEnergy.fwd.hh>
36 #include <core/scoring/methods/MMLJEnergyInter.fwd.hh>
37 #include <core/scoring/etable/count_pair/CountPairCrossover4.hh>
38 #include <core/types.hh>
39 
40 // ObjexxFCL Headers
41 #include <ObjexxFCL/FArray2D.fwd.hh>
42 
43 namespace core {
44 namespace scoring {
45 namespace etable {
46 namespace etrie {
47 
48 class TrieCountPair1BC4 : public trie::TrieCountPairBase
49 {
50 private:
51  Size const res1_cpdat_;
52  Size const res2_cpdat_;
53 
54 public:
55 
56  TrieCountPair1BC4( Size res1_cpdat_for_res2, Size res2_cpdat_for_res1 )
57  :
58  res1_cpdat_( res1_cpdat_for_res2 ),
59  res2_cpdat_( res2_cpdat_for_res1 )
60  {}
61 
62  ///------------ Useful Functions ------------------///
63  template < class CPDATA1, class CPDATA2 >
64  bool operator () ( CPDATA1 const & at1dat, CPDATA2 const & at2dat, Real & weight, Size & path_dist )
65  {
66  path_dist = at1dat.conn_dist( res1_cpdat_ ) + at2dat.conn_dist( res2_cpdat_ ) + 1;
67  return count_pair::CountPairCrossover4::count_at_path_distance( path_dist, weight );
68  }
69 
70  /* static
71  void
72  print(); */
73 
74  ///---------- TYPE RESOLUTION FUNCTIONS ----------///
75  virtual
76  void
77  resolve_trie_vs_trie(
78  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
79  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
80  etable::TableLookupEvaluator const & sfxn,
81  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
82  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
83 
84  virtual
85  void
86  resolve_trie_vs_trie(
87  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
88  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
89  etable::TableLookupEvaluator const & sfxn,
90  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
91  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
92 
93  virtual
94  void
95  resolve_trie_vs_trie(
96  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
97  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
98  etable::TableLookupEvaluator const & sfxn,
99  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
100  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
101 
102  virtual
103  void
104  resolve_trie_vs_trie(
105  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
106  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
107  etable::TableLookupEvaluator const & sfxn,
108  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
109  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
110 
111  virtual
112  void
113  resolve_trie_vs_trie(
114  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
115  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
116  etable::TableLookupEvaluator const & sfxn,
117  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
118  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
119 
120  virtual
121  void
122  resolve_trie_vs_trie(
123  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
124  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
125  etable::TableLookupEvaluator const & sfxn,
126  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
127  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
128 
129  virtual
130  void
131  resolve_trie_vs_trie(
132  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
133  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
134  etable::TableLookupEvaluator const & sfxn,
135  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
136  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
137 
138  virtual
139  void
140  resolve_trie_vs_trie(
141  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
142  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
143  etable::TableLookupEvaluator const & sfxn,
144  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
145  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
146 
147  virtual
148  void
149  resolve_trie_vs_trie(
150  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
151  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
152  etable::TableLookupEvaluator const & sfxn,
153  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
154  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
155 
156  virtual
157  void
158  resolve_trie_vs_trie(
159  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
160  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
161  etable::TableLookupEvaluator const & sfxn,
162  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
163  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
164 
165  virtual
166  void
167  resolve_trie_vs_trie(
168  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
169  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
170  etable::TableLookupEvaluator const & sfxn,
171  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
172  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
173 
174  virtual
175  void
176  resolve_trie_vs_trie(
177  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
178  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
179  etable::TableLookupEvaluator const & sfxn,
180  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
181  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
182 
183  virtual
184  void
185  resolve_trie_vs_trie(
186  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
187  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
188  etable::TableLookupEvaluator const & sfxn,
189  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
190  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
191 
192  virtual
193  void
194  resolve_trie_vs_trie(
195  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
196  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
197  etable::TableLookupEvaluator const & sfxn,
198  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
199  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
200 
201  virtual
202  void
203  resolve_trie_vs_trie(
204  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
205  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
206  etable::TableLookupEvaluator const & sfxn,
207  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
208  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
209 
210  virtual
211  void
212  resolve_trie_vs_trie(
213  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
214  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
215  etable::TableLookupEvaluator const & sfxn,
216  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
217  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
218 
219  virtual
220  void
221  resolve_trie_vs_path(
222  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
223  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
224  etable::TableLookupEvaluator const & sfxn,
225  utility::vector1< core::PackerEnergy > & pair_energy_vector,
226  utility::vector1< core::PackerEnergy > & temp_vector);
227 
228  virtual
229  void
230  resolve_trie_vs_path(
231  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
232  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
233  etable::TableLookupEvaluator const & sfxn,
234  utility::vector1< core::PackerEnergy > & pair_energy_vector,
235  utility::vector1< core::PackerEnergy > & temp_vector);
236 
237  virtual
238  void
239  resolve_trie_vs_path(
240  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
241  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
242  etable::TableLookupEvaluator const & sfxn,
243  utility::vector1< core::PackerEnergy > & pair_energy_vector,
244  utility::vector1< core::PackerEnergy > & temp_vector);
245 
246  virtual
247  void
248  resolve_trie_vs_path(
249  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
250  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
251  etable::TableLookupEvaluator const & sfxn,
252  utility::vector1< core::PackerEnergy > & pair_energy_vector,
253  utility::vector1< core::PackerEnergy > & temp_vector);
254 
255  virtual
256  void
257  resolve_trie_vs_path(
258  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
259  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
260  etable::TableLookupEvaluator const & sfxn,
261  utility::vector1< core::PackerEnergy > & pair_energy_vector,
262  utility::vector1< core::PackerEnergy > & temp_vector);
263 
264  virtual
265  void
266  resolve_trie_vs_path(
267  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
268  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
269  etable::TableLookupEvaluator const & sfxn,
270  utility::vector1< core::PackerEnergy > & pair_energy_vector,
271  utility::vector1< core::PackerEnergy > & temp_vector);
272 
273  virtual
274  void
275  resolve_trie_vs_path(
276  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
277  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
278  etable::TableLookupEvaluator const & sfxn,
279  utility::vector1< core::PackerEnergy > & pair_energy_vector,
280  utility::vector1< core::PackerEnergy > & temp_vector);
281 
282  virtual
283  void
284  resolve_trie_vs_path(
285  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
286  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
287  etable::TableLookupEvaluator const & sfxn,
288  utility::vector1< core::PackerEnergy > & pair_energy_vector,
289  utility::vector1< core::PackerEnergy > & temp_vector);
290 
291  virtual
292  void
293  resolve_trie_vs_path(
294  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
295  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
296  etable::TableLookupEvaluator const & sfxn,
297  utility::vector1< core::PackerEnergy > & pair_energy_vector,
298  utility::vector1< core::PackerEnergy > & temp_vector);
299 
300  virtual
301  void
302  resolve_trie_vs_path(
303  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
304  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
305  etable::TableLookupEvaluator const & sfxn,
306  utility::vector1< core::PackerEnergy > & pair_energy_vector,
307  utility::vector1< core::PackerEnergy > & temp_vector);
308 
309  virtual
310  void
311  resolve_trie_vs_path(
312  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
313  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
314  etable::TableLookupEvaluator const & sfxn,
315  utility::vector1< core::PackerEnergy > & pair_energy_vector,
316  utility::vector1< core::PackerEnergy > & temp_vector);
317 
318  virtual
319  void
320  resolve_trie_vs_path(
321  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
322  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
323  etable::TableLookupEvaluator const & sfxn,
324  utility::vector1< core::PackerEnergy > & pair_energy_vector,
325  utility::vector1< core::PackerEnergy > & temp_vector);
326 
327  virtual
328  void
329  resolve_trie_vs_path(
330  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
331  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
332  etable::TableLookupEvaluator const & sfxn,
333  utility::vector1< core::PackerEnergy > & pair_energy_vector,
334  utility::vector1< core::PackerEnergy > & temp_vector);
335 
336  virtual
337  void
338  resolve_trie_vs_path(
339  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
340  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
341  etable::TableLookupEvaluator const & sfxn,
342  utility::vector1< core::PackerEnergy > & pair_energy_vector,
343  utility::vector1< core::PackerEnergy > & temp_vector);
344 
345  virtual
346  void
347  resolve_trie_vs_path(
348  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
349  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
350  etable::TableLookupEvaluator const & sfxn,
351  utility::vector1< core::PackerEnergy > & pair_energy_vector,
352  utility::vector1< core::PackerEnergy > & temp_vector);
353 
354  virtual
355  void
356  resolve_trie_vs_path(
357  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
358  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
359  etable::TableLookupEvaluator const & sfxn,
360  utility::vector1< core::PackerEnergy > & pair_energy_vector,
361  utility::vector1< core::PackerEnergy > & temp_vector);
362 
363 
364  //////////////////////////////////// EtableEnergy -- analytic evaluation /////////////////////////////////
365 
366  virtual
367  void
368  resolve_trie_vs_trie(
369  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
370  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
371  etable::AnalyticEtableEvaluator const & sfxn,
372  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
373  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
374 
375  virtual
376  void
377  resolve_trie_vs_trie(
378  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
379  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
380  etable::AnalyticEtableEvaluator const & sfxn,
381  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
382  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
383 
384  virtual
385  void
386  resolve_trie_vs_trie(
387  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
388  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
389  etable::AnalyticEtableEvaluator const & sfxn,
390  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
391  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
392 
393  virtual
394  void
395  resolve_trie_vs_trie(
396  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
397  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
398  etable::AnalyticEtableEvaluator const & sfxn,
399  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
400  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
401 
402  virtual
403  void
404  resolve_trie_vs_trie(
405  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
406  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
407  etable::AnalyticEtableEvaluator const & sfxn,
408  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
409  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
410 
411  virtual
412  void
413  resolve_trie_vs_trie(
414  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
415  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
416  etable::AnalyticEtableEvaluator const & sfxn,
417  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
418  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
419 
420  virtual
421  void
422  resolve_trie_vs_trie(
423  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
424  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
425  etable::AnalyticEtableEvaluator const & sfxn,
426  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
427  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
428 
429  virtual
430  void
431  resolve_trie_vs_trie(
432  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
433  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
434  etable::AnalyticEtableEvaluator const & sfxn,
435  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
436  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
437 
438  virtual
439  void
440  resolve_trie_vs_trie(
441  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
442  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
443  etable::AnalyticEtableEvaluator const & sfxn,
444  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
445  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
446 
447  virtual
448  void
449  resolve_trie_vs_trie(
450  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
451  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
452  etable::AnalyticEtableEvaluator const & sfxn,
453  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
454  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
455 
456  virtual
457  void
458  resolve_trie_vs_trie(
459  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
460  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
461  etable::AnalyticEtableEvaluator const & sfxn,
462  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
463  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
464 
465  virtual
466  void
467  resolve_trie_vs_trie(
468  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
469  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
470  etable::AnalyticEtableEvaluator const & sfxn,
471  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
472  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
473 
474  virtual
475  void
476  resolve_trie_vs_trie(
477  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
478  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
479  etable::AnalyticEtableEvaluator const & sfxn,
480  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
481  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
482 
483  virtual
484  void
485  resolve_trie_vs_trie(
486  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
487  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
488  etable::AnalyticEtableEvaluator const & sfxn,
489  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
490  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
491 
492  virtual
493  void
494  resolve_trie_vs_trie(
495  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
496  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
497  etable::AnalyticEtableEvaluator const & sfxn,
498  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
499  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
500 
501  virtual
502  void
503  resolve_trie_vs_trie(
504  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
505  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
506  etable::AnalyticEtableEvaluator const & sfxn,
507  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
508  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
509 
510  virtual
511  void
512  resolve_trie_vs_path(
513  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
514  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
515  etable::AnalyticEtableEvaluator const & sfxn,
516  utility::vector1< core::PackerEnergy > & pair_energy_vector,
517  utility::vector1< core::PackerEnergy > & temp_vector);
518 
519  virtual
520  void
521  resolve_trie_vs_path(
522  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
523  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
524  etable::AnalyticEtableEvaluator const & sfxn,
525  utility::vector1< core::PackerEnergy > & pair_energy_vector,
526  utility::vector1< core::PackerEnergy > & temp_vector);
527 
528  virtual
529  void
530  resolve_trie_vs_path(
531  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
532  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
533  etable::AnalyticEtableEvaluator const & sfxn,
534  utility::vector1< core::PackerEnergy > & pair_energy_vector,
535  utility::vector1< core::PackerEnergy > & temp_vector);
536 
537  virtual
538  void
539  resolve_trie_vs_path(
540  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie1,
541  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
542  etable::AnalyticEtableEvaluator const & sfxn,
543  utility::vector1< core::PackerEnergy > & pair_energy_vector,
544  utility::vector1< core::PackerEnergy > & temp_vector);
545 
546  virtual
547  void
548  resolve_trie_vs_path(
549  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
550  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
551  etable::AnalyticEtableEvaluator const & sfxn,
552  utility::vector1< core::PackerEnergy > & pair_energy_vector,
553  utility::vector1< core::PackerEnergy > & temp_vector);
554 
555  virtual
556  void
557  resolve_trie_vs_path(
558  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
559  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
560  etable::AnalyticEtableEvaluator const & sfxn,
561  utility::vector1< core::PackerEnergy > & pair_energy_vector,
562  utility::vector1< core::PackerEnergy > & temp_vector);
563 
564  virtual
565  void
566  resolve_trie_vs_path(
567  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
568  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
569  etable::AnalyticEtableEvaluator const & sfxn,
570  utility::vector1< core::PackerEnergy > & pair_energy_vector,
571  utility::vector1< core::PackerEnergy > & temp_vector);
572 
573  virtual
574  void
575  resolve_trie_vs_path(
576  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie1,
577  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
578  etable::AnalyticEtableEvaluator const & sfxn,
579  utility::vector1< core::PackerEnergy > & pair_energy_vector,
580  utility::vector1< core::PackerEnergy > & temp_vector);
581 
582  virtual
583  void
584  resolve_trie_vs_path(
585  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
586  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
587  etable::AnalyticEtableEvaluator const & sfxn,
588  utility::vector1< core::PackerEnergy > & pair_energy_vector,
589  utility::vector1< core::PackerEnergy > & temp_vector);
590 
591  virtual
592  void
593  resolve_trie_vs_path(
594  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
595  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
596  etable::AnalyticEtableEvaluator const & sfxn,
597  utility::vector1< core::PackerEnergy > & pair_energy_vector,
598  utility::vector1< core::PackerEnergy > & temp_vector);
599 
600  virtual
601  void
602  resolve_trie_vs_path(
603  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
604  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
605  etable::AnalyticEtableEvaluator const & sfxn,
606  utility::vector1< core::PackerEnergy > & pair_energy_vector,
607  utility::vector1< core::PackerEnergy > & temp_vector);
608 
609  virtual
610  void
611  resolve_trie_vs_path(
612  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie1,
613  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
614  etable::AnalyticEtableEvaluator const & sfxn,
615  utility::vector1< core::PackerEnergy > & pair_energy_vector,
616  utility::vector1< core::PackerEnergy > & temp_vector);
617 
618  virtual
619  void
620  resolve_trie_vs_path(
621  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
622  trie::RotamerTrie< EtableAtom, CountPairData_1_1 > const & trie2,
623  etable::AnalyticEtableEvaluator const & sfxn,
624  utility::vector1< core::PackerEnergy > & pair_energy_vector,
625  utility::vector1< core::PackerEnergy > & temp_vector);
626 
627  virtual
628  void
629  resolve_trie_vs_path(
630  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
631  trie::RotamerTrie< EtableAtom, CountPairData_1_2 > const & trie2,
632  etable::AnalyticEtableEvaluator const & sfxn,
633  utility::vector1< core::PackerEnergy > & pair_energy_vector,
634  utility::vector1< core::PackerEnergy > & temp_vector);
635 
636  virtual
637  void
638  resolve_trie_vs_path(
639  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
640  trie::RotamerTrie< EtableAtom, CountPairData_1_3 > const & trie2,
641  etable::AnalyticEtableEvaluator const & sfxn,
642  utility::vector1< core::PackerEnergy > & pair_energy_vector,
643  utility::vector1< core::PackerEnergy > & temp_vector);
644 
645  virtual
646  void
647  resolve_trie_vs_path(
648  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie1,
649  trie::RotamerTrie< EtableAtom, CountPairDataGeneric > const & trie2,
650  etable::AnalyticEtableEvaluator const & sfxn,
651  utility::vector1< core::PackerEnergy > & pair_energy_vector,
652  utility::vector1< core::PackerEnergy > & temp_vector);
653 
654  // HBONDS
655  virtual
656  void
657  resolve_trie_vs_trie(
658  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
659  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
660  hbonds::HBondEnergy const & sfxn,
661  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
662  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
663 
664 
665  virtual
666  void
667  resolve_trie_vs_path(
668  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie1,
669  trie::RotamerTrie< hbonds::hbtrie::HBAtom, hbonds::hbtrie::HBCPData > const & trie2,
670  hbonds::HBondEnergy const & sfxn,
671  utility::vector1< core::PackerEnergy > & pair_energy_vector,
672  utility::vector1< core::PackerEnergy > & temp_vector);
673 
674 /// Hack Elec Energy
675 
676 
677  virtual
678  void
679  resolve_trie_vs_trie(
680  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
681  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
682  hackelec::HackElecEnergy const & sfxn,
683  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
684  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
685 
686  virtual
687  void
688  resolve_trie_vs_trie(
689  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
690  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
691  hackelec::HackElecEnergy const & sfxn,
692  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
693  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
694 
695  virtual
696  void
697  resolve_trie_vs_trie(
698  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
699  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
700  hackelec::HackElecEnergy const & sfxn,
701  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
702  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
703 
704  virtual
705  void
706  resolve_trie_vs_trie(
707  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
708  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
709  hackelec::HackElecEnergy const & sfxn,
710  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
711  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
712 
713  virtual
714  void
715  resolve_trie_vs_trie(
716  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
717  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
718  hackelec::HackElecEnergy const & sfxn,
719  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
720  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
721 
722  virtual
723  void
724  resolve_trie_vs_trie(
725  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
726  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
727  hackelec::HackElecEnergy const & sfxn,
728  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
729  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
730 
731  virtual
732  void
733  resolve_trie_vs_trie(
734  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
735  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
736  hackelec::HackElecEnergy const & sfxn,
737  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
738  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
739 
740  virtual
741  void
742  resolve_trie_vs_trie(
743  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
744  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
745  hackelec::HackElecEnergy const & sfxn,
746  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
747  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
748 
749  virtual
750  void
751  resolve_trie_vs_trie(
752  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
753  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
754  hackelec::HackElecEnergy const & sfxn,
755  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
756  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
757 
758  virtual
759  void
760  resolve_trie_vs_trie(
761  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
762  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
763  hackelec::HackElecEnergy const & sfxn,
764  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
765  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
766 
767  virtual
768  void
769  resolve_trie_vs_trie(
770  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
771  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
772  hackelec::HackElecEnergy const & sfxn,
773  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
774  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
775 
776  virtual
777  void
778  resolve_trie_vs_trie(
779  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
780  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
781  hackelec::HackElecEnergy const & sfxn,
782  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
783  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
784 
785  virtual
786  void
787  resolve_trie_vs_trie(
788  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
789  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
790  hackelec::HackElecEnergy const & sfxn,
791  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
792  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
793 
794  virtual
795  void
796  resolve_trie_vs_trie(
797  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
798  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
799  hackelec::HackElecEnergy const & sfxn,
800  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
801  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
802 
803  virtual
804  void
805  resolve_trie_vs_trie(
806  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
807  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
808  hackelec::HackElecEnergy const & sfxn,
809  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
810  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
811 
812  virtual
813  void
814  resolve_trie_vs_trie(
815  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
816  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
817  hackelec::HackElecEnergy const & sfxn,
818  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
819  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
820 
821  virtual
822  void
823  resolve_trie_vs_path(
824  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
825  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
826  hackelec::HackElecEnergy const & sfxn,
827  utility::vector1< core::PackerEnergy > & pair_energy_vector,
828  utility::vector1< core::PackerEnergy > & temp_vector);
829 
830  virtual
831  void
832  resolve_trie_vs_path(
833  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
834  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
835  hackelec::HackElecEnergy const & sfxn,
836  utility::vector1< core::PackerEnergy > & pair_energy_vector,
837  utility::vector1< core::PackerEnergy > & temp_vector);
838 
839  virtual
840  void
841  resolve_trie_vs_path(
842  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
843  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
844  hackelec::HackElecEnergy const & sfxn,
845  utility::vector1< core::PackerEnergy > & pair_energy_vector,
846  utility::vector1< core::PackerEnergy > & temp_vector);
847 
848  virtual
849  void
850  resolve_trie_vs_path(
851  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie1,
852  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
853  hackelec::HackElecEnergy const & sfxn,
854  utility::vector1< core::PackerEnergy > & pair_energy_vector,
855  utility::vector1< core::PackerEnergy > & temp_vector);
856 
857  virtual
858  void
859  resolve_trie_vs_path(
860  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
861  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
862  hackelec::HackElecEnergy const & sfxn,
863  utility::vector1< core::PackerEnergy > & pair_energy_vector,
864  utility::vector1< core::PackerEnergy > & temp_vector);
865 
866  virtual
867  void
868  resolve_trie_vs_path(
869  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
870  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
871  hackelec::HackElecEnergy const & sfxn,
872  utility::vector1< core::PackerEnergy > & pair_energy_vector,
873  utility::vector1< core::PackerEnergy > & temp_vector);
874 
875  virtual
876  void
877  resolve_trie_vs_path(
878  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
879  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
880  hackelec::HackElecEnergy const & sfxn,
881  utility::vector1< core::PackerEnergy > & pair_energy_vector,
882  utility::vector1< core::PackerEnergy > & temp_vector);
883 
884  virtual
885  void
886  resolve_trie_vs_path(
887  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie1,
888  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
889  hackelec::HackElecEnergy const & sfxn,
890  utility::vector1< core::PackerEnergy > & pair_energy_vector,
891  utility::vector1< core::PackerEnergy > & temp_vector);
892 
893  virtual
894  void
895  resolve_trie_vs_path(
896  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
897  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
898  hackelec::HackElecEnergy const & sfxn,
899  utility::vector1< core::PackerEnergy > & pair_energy_vector,
900  utility::vector1< core::PackerEnergy > & temp_vector);
901 
902  virtual
903  void
904  resolve_trie_vs_path(
905  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
906  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
907  hackelec::HackElecEnergy const & sfxn,
908  utility::vector1< core::PackerEnergy > & pair_energy_vector,
909  utility::vector1< core::PackerEnergy > & temp_vector);
910 
911  virtual
912  void
913  resolve_trie_vs_path(
914  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
915  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
916  hackelec::HackElecEnergy const & sfxn,
917  utility::vector1< core::PackerEnergy > & pair_energy_vector,
918  utility::vector1< core::PackerEnergy > & temp_vector);
919 
920  virtual
921  void
922  resolve_trie_vs_path(
923  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie1,
924  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
925  hackelec::HackElecEnergy const & sfxn,
926  utility::vector1< core::PackerEnergy > & pair_energy_vector,
927  utility::vector1< core::PackerEnergy > & temp_vector);
928 
929  virtual
930  void
931  resolve_trie_vs_path(
932  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
933  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_1 > const & trie2,
934  hackelec::HackElecEnergy const & sfxn,
935  utility::vector1< core::PackerEnergy > & pair_energy_vector,
936  utility::vector1< core::PackerEnergy > & temp_vector);
937 
938  virtual
939  void
940  resolve_trie_vs_path(
941  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
942  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_2 > const & trie2,
943  hackelec::HackElecEnergy const & sfxn,
944  utility::vector1< core::PackerEnergy > & pair_energy_vector,
945  utility::vector1< core::PackerEnergy > & temp_vector);
946 
947  virtual
948  void
949  resolve_trie_vs_path(
950  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
951  trie::RotamerTrie< hackelec::ElecAtom, CountPairData_1_3 > const & trie2,
952  hackelec::HackElecEnergy const & sfxn,
953  utility::vector1< core::PackerEnergy > & pair_energy_vector,
954  utility::vector1< core::PackerEnergy > & temp_vector);
955 
956  virtual
957  void
958  resolve_trie_vs_path(
959  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie1,
960  trie::RotamerTrie< hackelec::ElecAtom, CountPairDataGeneric > const & trie2,
961  hackelec::HackElecEnergy const & sfxn,
962  utility::vector1< core::PackerEnergy > & pair_energy_vector,
963  utility::vector1< core::PackerEnergy > & temp_vector);
964 
965  /////////////////////////// MMLJEnergyInter //////////////////////////////
966  virtual
967  void
968  resolve_trie_vs_trie(
969  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
970  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
971  methods::MMLJEnergyInter const & sfxn,
972  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
973  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
974 
975  virtual
976  void
977  resolve_trie_vs_trie(
978  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
979  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
980  methods::MMLJEnergyInter const & sfxn,
981  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
982  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
983 
984  virtual
985  void
986  resolve_trie_vs_trie(
987  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
988  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
989  methods::MMLJEnergyInter const & sfxn,
990  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
991  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
992 
993  virtual
994  void
995  resolve_trie_vs_trie(
996  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
997  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
998  methods::MMLJEnergyInter const & sfxn,
999  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1000  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1001 
1002  virtual
1003  void
1004  resolve_trie_vs_trie(
1005  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1006  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1007  methods::MMLJEnergyInter const & sfxn,
1008  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1009  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1010 
1011  virtual
1012  void
1013  resolve_trie_vs_trie(
1014  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1015  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1016  methods::MMLJEnergyInter const & sfxn,
1017  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1018  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1019 
1020  virtual
1021  void
1022  resolve_trie_vs_trie(
1023  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1024  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1025  methods::MMLJEnergyInter const & sfxn,
1026  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1027  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1028 
1029  virtual
1030  void
1031  resolve_trie_vs_trie(
1032  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1033  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1034  methods::MMLJEnergyInter const & sfxn,
1035  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1036  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1037 
1038  virtual
1039  void
1040  resolve_trie_vs_trie(
1041  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1042  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1043  methods::MMLJEnergyInter const & sfxn,
1044  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1045  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1046 
1047  virtual
1048  void
1049  resolve_trie_vs_trie(
1050  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1051  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1052  methods::MMLJEnergyInter const & sfxn,
1053  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1054  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1055 
1056  virtual
1057  void
1058  resolve_trie_vs_trie(
1059  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1060  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1061  methods::MMLJEnergyInter const & sfxn,
1062  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1063  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1064 
1065  virtual
1066  void
1067  resolve_trie_vs_trie(
1068  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1069  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1070  methods::MMLJEnergyInter const & sfxn,
1071  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1072  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1073 
1074  virtual
1075  void
1076  resolve_trie_vs_trie(
1077  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1078  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1079  methods::MMLJEnergyInter const & sfxn,
1080  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1081  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1082 
1083  virtual
1084  void
1085  resolve_trie_vs_trie(
1086  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1087  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1088  methods::MMLJEnergyInter const & sfxn,
1089  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1090  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1091 
1092  virtual
1093  void
1094  resolve_trie_vs_trie(
1095  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1096  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1097  methods::MMLJEnergyInter const & sfxn,
1098  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1099  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1100 
1101  virtual
1102  void
1103  resolve_trie_vs_trie(
1104  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1105  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1106  methods::MMLJEnergyInter const & sfxn,
1107  ObjexxFCL::FArray2D< core::PackerEnergy > & pair_energy_table,
1108  ObjexxFCL::FArray2D< core::PackerEnergy > & temp_table);
1109 
1110  virtual
1111  void
1112  resolve_trie_vs_path(
1113  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1114  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1115  methods::MMLJEnergyInter const & sfxn,
1116  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1117  utility::vector1< core::PackerEnergy > & temp_vector);
1118 
1119  virtual
1120  void
1121  resolve_trie_vs_path(
1122  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1123  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1124  methods::MMLJEnergyInter const & sfxn,
1125  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1126  utility::vector1< core::PackerEnergy > & temp_vector);
1127 
1128  virtual
1129  void
1130  resolve_trie_vs_path(
1131  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1132  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1133  methods::MMLJEnergyInter const & sfxn,
1134  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1135  utility::vector1< core::PackerEnergy > & temp_vector);
1136 
1137  virtual
1138  void
1139  resolve_trie_vs_path(
1140  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie1,
1141  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1142  methods::MMLJEnergyInter const & sfxn,
1143  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1144  utility::vector1< core::PackerEnergy > & temp_vector);
1145 
1146  virtual
1147  void
1148  resolve_trie_vs_path(
1149  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1150  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1151  methods::MMLJEnergyInter const & sfxn,
1152  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1153  utility::vector1< core::PackerEnergy > & temp_vector);
1154 
1155  virtual
1156  void
1157  resolve_trie_vs_path(
1158  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1159  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1160  methods::MMLJEnergyInter const & sfxn,
1161  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1162  utility::vector1< core::PackerEnergy > & temp_vector);
1163 
1164  virtual
1165  void
1166  resolve_trie_vs_path(
1167  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1168  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1169  methods::MMLJEnergyInter const & sfxn,
1170  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1171  utility::vector1< core::PackerEnergy > & temp_vector);
1172 
1173  virtual
1174  void
1175  resolve_trie_vs_path(
1176  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie1,
1177  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1178  methods::MMLJEnergyInter const & sfxn,
1179  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1180  utility::vector1< core::PackerEnergy > & temp_vector);
1181 
1182  virtual
1183  void
1184  resolve_trie_vs_path(
1185  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1186  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1187  methods::MMLJEnergyInter const & sfxn,
1188  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1189  utility::vector1< core::PackerEnergy > & temp_vector);
1190 
1191  virtual
1192  void
1193  resolve_trie_vs_path(
1194  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1195  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1196  methods::MMLJEnergyInter const & sfxn,
1197  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1198  utility::vector1< core::PackerEnergy > & temp_vector);
1199 
1200  virtual
1201  void
1202  resolve_trie_vs_path(
1203  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1204  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1205  methods::MMLJEnergyInter const & sfxn,
1206  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1207  utility::vector1< core::PackerEnergy > & temp_vector);
1208 
1209  virtual
1210  void
1211  resolve_trie_vs_path(
1212  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie1,
1213  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1214  methods::MMLJEnergyInter const & sfxn,
1215  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1216  utility::vector1< core::PackerEnergy > & temp_vector);
1217 
1218  virtual
1219  void
1220  resolve_trie_vs_path(
1221  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1222  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_1 > const & trie2,
1223  methods::MMLJEnergyInter const & sfxn,
1224  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1225  utility::vector1< core::PackerEnergy > & temp_vector);
1226 
1227  virtual
1228  void
1229  resolve_trie_vs_path(
1230  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1231  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_2 > const & trie2,
1232  methods::MMLJEnergyInter const & sfxn,
1233  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1234  utility::vector1< core::PackerEnergy > & temp_vector);
1235 
1236  virtual
1237  void
1238  resolve_trie_vs_path(
1239  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1240  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairData_1_3 > const & trie2,
1241  methods::MMLJEnergyInter const & sfxn,
1242  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1243  utility::vector1< core::PackerEnergy > & temp_vector);
1244 
1245  virtual
1246  void
1247  resolve_trie_vs_path(
1248  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie1,
1249  trie::RotamerTrie< mm::mmtrie::MMEnergyTableAtom, CountPairDataGeneric > const & trie2,
1250  methods::MMLJEnergyInter const & sfxn,
1251  utility::vector1< core::PackerEnergy > & pair_energy_vector,
1252  utility::vector1< core::PackerEnergy > & temp_vector);
1253 
1254 };
1255 
1256 
1257 } // namespace etrie
1258 } // namespace etable
1259 } // namespace scoring
1260 } // namespace core
1261 
1262 #endif
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