| add_end_variants(core::pose::Pose &pose) | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| add_peptide_plane_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| append_residues(core::pose::Pose &pose, core::pose::Pose const &start_pose) | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| apply(core::pose::Pose &pose_to_visualize) | protocols::swa::protein::StepWiseProteinPoseSetup | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| c_terminus_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| desired_sequence_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| figure_out_nested_positions(std::string const &inside_sequence, std::string const &desired_sequence) const | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::swa::protein::StepWiseProteinPoseSetup | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_from_scratch(core::pose::Pose &pose) | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| input_residue_array_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| junction_residue_array_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| match_end_variants(core::pose::Pose const &pose, core::pose::Pose &scratch_pose, core::Size const &start_res, core::Size const &end_res) const | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| match_specific_variants(core::pose::Pose const &pose, core::Size const &pose_res, core::pose::Pose &scratch_pose, core::Size const &scratch_pose_res, utility::vector1< core::chemical::VariantType > const &variant_types) const | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| moving_residue_array_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| moving_residues() const | protocols::swa::protein::StepWiseProteinPoseSetup | |
| moving_residues_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| n_terminus_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| name() | protocols::moves::Mover | inlinestatic |
| nres_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| prepend_residues(core::pose::Pose &pose) | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| rsd_set_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| sample_junction_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_add_peptide_plane(bool const &setting) | protocols::swa::protein::StepWiseProteinPoseSetup | |
| set_c_terminus(bool const setting) | protocols::swa::protein::StepWiseProteinPoseSetup | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_n_terminus(bool const setting) | protocols::swa::protein::StepWiseProteinPoseSetup | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_sample_junction(bool const setting) | protocols::swa::protein::StepWiseProteinPoseSetup | inline |
| silent_files_in_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| start_tags_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| StepWiseProteinPoseSetup(std::string const &desired_sequence, utility::vector1< std::string > const &start_tags, utility::vector1< std::string > const &silent_files_in) | protocols::swa::protein::StepWiseProteinPoseSetup | |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| verbose_ | protocols::swa::protein::StepWiseProteinPoseSetup | private |
| ~Mover() | protocols::moves::Mover | virtual |
| ~StepWiseProteinPoseSetup() | protocols::swa::protein::StepWiseProteinPoseSetup | |
1.8.4