#include <ProteinRMSDFeatures.hh>

Inheritance diagram for protocols::features::ProteinRMSDFeatures:

Collaboration diagram for protocols::features::ProteinRMSDFeatures:

Public Member Functions
	ProteinRMSDFeatures ()

	ProteinRMSDFeatures (core::pose::PoseCOP reference_pose)

	ProteinRMSDFeatures (ProteinRMSDFeatures const &)

virtual	~ProteinRMSDFeatures ()

std::string	type_name () const
	return string with class name More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

core::pose::PoseCOP	reference_pose () const

void	reference_pose (core::pose::PoseCOP)

virtual void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &pose)

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &)

virtual void	delete_record (boost::uuids::uuid, utility::sql_database::sessionOP)

Private Member Functions
void	write_protein_rmsd_table_schema (utility::sql_database::sessionOP db_session) const
	generate the protein_rmsd table schema More...

Private Attributes
core::pose::PoseCOP	reference_pose_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 42 of file ProteinRMSDFeatures.hh.

Constructor & Destructor Documentation

protocols::features::ProteinRMSDFeatures::ProteinRMSDFeatures ( )

inline

If you use this constructore, before applying, make sure the reference pose is specified, either through the set_reference_pose method or parse_my_tag.

Definition at line 48 of file ProteinRMSDFeatures.hh.

protocols::features::ProteinRMSDFeatures::ProteinRMSDFeatures ( core::pose::PoseCOP reference_pose)

protocols::features::ProteinRMSDFeatures::ProteinRMSDFeatures ( ProteinRMSDFeatures const & )

inline

Definition at line 54 of file ProteinRMSDFeatures.hh.

virtual protocols::features::ProteinRMSDFeatures::~ProteinRMSDFeatures ( )

inlinevirtual

Definition at line 59 of file ProteinRMSDFeatures.hh.

Member Function Documentation

utility::vector1< std::string > protocols::features::ProteinRMSDFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 160 of file ProteinRMSDFeatures.cc.

void protocols::features::ProteinRMSDFeatures::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	pose
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 167 of file ProteinRMSDFeatures.cc.

References core::import_pose::pose_from_pdb(), reference_pose(), protocols::rosetta_scripts::saved_reference_pose(), and type_name().

PoseCOP protocols::features::ProteinRMSDFeatures::reference_pose ( ) const

Definition at line 93 of file ProteinRMSDFeatures.cc.

References reference_pose_.

Referenced by parse_my_tag().

void protocols::features::ProteinRMSDFeatures::reference_pose ( core::pose::PoseCOP )

Size protocols::features::ProteinRMSDFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)