PeptideStapleDesignMover.cc

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file protocols/protein_interface_design/movers/PeptideStapleDesignMover.cc
/// @brief
/// @author Sarel Fleishman (sarelf@u.washington.edu), Jacob Corn (jecorn@u.washington.edu)

// Unit headers
#include <protocols/protein_interface_design/movers/PeptideStapleDesignMover.hh>
#include <protocols/protein_interface_design/movers/PeptideStapleDesignMoverCreator.hh>

// Package headers

// Project headers
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <utility/tag/Tag.hh>
#include <basic/Tracer.hh>

#include <protocols/simple_moves/PeptideStapleMover.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>


namespace protocols {
namespace protein_interface_design {
namespace movers {

using namespace core;
using namespace std;
using namespace core::scoring;
using namespace protocols::moves;

static basic::Tracer TR( "protocols.protein_interface_design.movers.PeptideStapleDesignMover" );

std::string
PeptideStapleDesignMoverCreator::keyname() const
{
  return PeptideStapleDesignMoverCreator::mover_name();
}

protocols::moves::MoverOP
PeptideStapleDesignMoverCreator::create_mover() const {
  return new PeptideStapleDesignMover;
}

std::string
PeptideStapleDesignMoverCreator::mover_name()
{
  return "StapleMover";
}

PeptideStapleDesignMover::PeptideStapleDesignMover() :
  protocols::moves::Mover( PeptideStapleDesignMoverCreator::mover_name() )
{}

PeptideStapleDesignMover::PeptideStapleDesignMover( core::Size const seqpos, core::Size const staple_gap ) :
  protocols::moves::Mover( PeptideStapleDesignMoverCreator::mover_name() )
{
  stapler_ = new protocols::simple_moves::PeptideStapleMover( seqpos, staple_gap );
}

PeptideStapleDesignMover::PeptideStapleDesignMover( PeptideStapleDesignMover const & init ) :
  //utility::pointer::ReferenceCount(), 
  protocols::moves::Mover( init )
{
  stapler_ = new protocols::simple_moves::PeptideStapleMover( *(init.stapler_) );
}

PeptideStapleDesignMover::~PeptideStapleDesignMover() {}

protocols::moves::MoverOP
PeptideStapleDesignMover::clone() const {
  return( protocols::moves::MoverOP( new PeptideStapleDesignMover( *this ) ));
}

void PeptideStapleDesignMover::apply( core::pose::Pose & pose )
{
  stapler_->apply( pose );
}

std::string
PeptideStapleDesignMover::get_name() const {
  return PeptideStapleDesignMoverCreator::mover_name();
}

void
PeptideStapleDesignMover::parse_my_tag( TagPtr const tag, DataMap &, protocols::filters::Filters_map const &, Movers_map const &, core::pose::Pose const & pose )
{
  core::Size const staple_start( core::pose::get_resnum( tag, pose ));
  core::Size const gap( tag->getOption<core::Size>( "staple_gap", 4 ) );
  stapler_ = new protocols::simple_moves::PeptideStapleMover( staple_start, gap );
}

} //movers
} //protein_interface_design
} //protocols