#include <DisulfPairingLibrary.hh>

Inheritance diagram for protocols::jumping::DisulfPairingLibrary:

Collaboration diagram for protocols::jumping::DisulfPairingLibrary:

Public Member Functions
	DisulfPairingLibrary ()

void	read_from_file (std::string const &fn)

void	create_jump_fragments (bool bWithTorsion, core::fragment::FragDataList &frags) const

core::Size	size () const

void	generate_jump_frags (DisulfPairingsList const &pairings, core::kinematics::MoveMap const &mm, bool bWithTorsion, core::fragment::FragSet &frags_accumulator)

Public Member Functions inherited from protocols::jumping::BaseDisulfPairingLibrary
virtual	~BaseDisulfPairingLibrary ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

Private Types
typedef std::vector < DisulfTemplate >	DisulfTemplateList

typedef std::map< std::pair < int, int > , DisulfTemplateList >	DisulfTemplateMap

Private Attributes
DisulfTemplateMap	pairings_

DisulfTemplateList	all_pairings_

core::Size	num_of_pairings_

Detailed Description

Definition at line 102 of file DisulfPairingLibrary.hh.

Member Typedef Documentation

typedef std::vector< DisulfTemplate > protocols::jumping::DisulfPairingLibrary::DisulfTemplateList

private

Definition at line 103 of file DisulfPairingLibrary.hh.

typedef std::map< std::pair< int, int >, DisulfTemplateList > protocols::jumping::DisulfPairingLibrary::DisulfTemplateMap

private

Definition at line 104 of file DisulfPairingLibrary.hh.

Constructor & Destructor Documentation

protocols::jumping::DisulfPairingLibrary::DisulfPairingLibrary ( )

inline

Definition at line 106 of file DisulfPairingLibrary.hh.

Member Function Documentation

void protocols::jumping::DisulfPairingLibrary::create_jump_fragments	(	bool	bWithTorsion,
		core::fragment::FragDataList &	frags
	)		const

puts all jump-geometries that fit the orientation and pleating into list of FragData's. Try to reuse these FragData for different Frames that have same orientation and pleating

Definition at line 399 of file DisulfPairingLibrary.cc.

References all_pairings_, protocols::loops::start, and protocols::loops::stop.

Referenced by protocols::topology_broker::DisulfJumpClaimer::generate_jump_frags(), and generate_jump_frags().

void protocols::jumping::DisulfPairingLibrary::generate_jump_frags	(	DisulfPairingsList const &	pairings,
		core::kinematics::MoveMap const &	mm,
		bool	bWithTorsion,
		core::fragment::FragSet &	frags_accumulator
	)