protocols::pockets::PClusterSet Class Reference

@ More...

#include <PocketGrid.hh>

Collaboration diagram for protocols::pockets::PClusterSet:

Public Member Functions
	PClusterSet ()
PClusterSet &	operator= (const PClusterSet &old)
void	clear ()
std::list< PCluster >::iterator	add (core::Size x, core::Size y, core::Size z, core::Real step)
void	findClusters ()
void	join (std::list< PCluster >::iterator c1, std::list< PCluster >::iterator c2)
core::Real	getLargestClusterSize (core::Real const &stepSize, core::Real const &minClusterSize)
core::Real	getNetClusterSize (core::Real const &stepSize, core::Real const &minClusterSize)
core::Size	size ()

Private Attributes
std::list< PCluster >	clusters_

Friends
class	PocketGrid
class	EggshellGrid

Detailed Description

@

Definition at line 75 of file PocketGrid.hh.

Constructor & Destructor Documentation

protocols::pockets::PClusterSet::PClusterSet

(

)

Definition at line 176 of file PocketGrid.cc.

References clusters_.

Member Function Documentation

std::_List_iterator< protocols::pockets::PCluster > protocols::pockets::PClusterSet::add	(	core::Size	x,
		core::Size	y,
		core::Size	z,
		core::Real	step
	)

Definition at line 191 of file PocketGrid.cc.

References clusters_.

Referenced by protocols::pockets::PocketGrid::clusterPockets().

void protocols::pockets::PClusterSet::clear

(

)

Definition at line 187 of file PocketGrid.cc.

References clusters_.

Referenced by protocols::pockets::PocketGrid::clear(), and protocols::pockets::PocketGrid::recenter().

void protocols::pockets::PClusterSet::findClusters

(

)

Definition at line 202 of file PocketGrid.cc.

References clusters_.

core::Real protocols::pockets::PClusterSet::getLargestClusterSize	(	core::Real const &	stepSize,
		core::Real const &	minClusterSize
	)

Definition at line 218 of file PocketGrid.cc.

References clusters_.

Referenced by protocols::pockets::PocketGrid::largestTargetPocketVolume().

core::Real protocols::pockets::PClusterSet::getNetClusterSize	(	core::Real const &	stepSize,
		core::Real const &	minClusterSize
	)

Definition at line 232 of file PocketGrid.cc.

References clusters_.

Referenced by protocols::pockets::PocketGrid::netTargetPocketVolume().

void protocols::pockets::PClusterSet::join	(	std::list< PCluster >::iterator	c1,
		std::list< PCluster >::iterator	c2
	)

Definition at line 197 of file PocketGrid.cc.

References clusters_.

Referenced by protocols::pockets::PocketGrid::clusterPockets().

PClusterSet & protocols::pockets::PClusterSet::operator=

(

const PClusterSet &

old)

Definition at line 180 of file PocketGrid.cc.

References clusters_.

core::Size protocols::pockets::PClusterSet::size ( )

inline

Definition at line 90 of file PocketGrid.hh.

References clusters_.

Friends And Related Function Documentation

friend class EggshellGrid

friend

Definition at line 79 of file PocketGrid.hh.

friend class PocketGrid

friend

Definition at line 78 of file PocketGrid.hh.

Member Data Documentation

std::list<PCluster> protocols::pockets::PClusterSet::clusters_

private

Definition at line 93 of file PocketGrid.hh.

Referenced by add(), clear(), protocols::pockets::PocketGrid::clusterPockets(), protocols::pockets::PocketGrid::dumpGridToFile(), findClusters(), protocols::pockets::PocketGrid::findClusters(), protocols::pockets::PocketGrid::get_pocket_distance(), getLargestClusterSize(), getNetClusterSize(), join(), protocols::pockets::PocketGrid::markEdgeDepth(), protocols::pockets::PocketGrid::move_pose_to_standard_orie(), operator=(), PClusterSet(), and size().

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The documentation for this class was generated from the following files:

• src/protocols/pockets/PocketGrid.hh
• src/protocols/pockets/PocketGrid.cc