#include <ProteinResidueConformationFeatures.hh>

Inheritance diagram for protocols::features::ProteinResidueConformationFeatures:

Collaboration diagram for protocols::features::ProteinResidueConformationFeatures:

Public Member Functions
	ProteinResidueConformationFeatures ()

	ProteinResidueConformationFeatures (ProteinResidueConformationFeatures const &)

virtual	~ProteinResidueConformationFeatures ()

virtual void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

std::string	type_name () const
	return string with class name More...

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

void	delete_record (boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)

void	load_into_pose (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

void	load_conformation (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Private Member Functions
void	set_coords_for_residues (utility::sql_database::sessionOP db_session, boost::uuids::uuid struct_id, core::pose::Pose &pose)

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 41 of file ProteinResidueConformationFeatures.hh.

Constructor & Destructor Documentation

protocols::features::ProteinResidueConformationFeatures::ProteinResidueConformationFeatures ( )

inline

Definition at line 43 of file ProteinResidueConformationFeatures.hh.

protocols::features::ProteinResidueConformationFeatures::ProteinResidueConformationFeatures ( ProteinResidueConformationFeatures const & )

inline

Definition at line 45 of file ProteinResidueConformationFeatures.hh.

virtual protocols::features::ProteinResidueConformationFeatures::~ProteinResidueConformationFeatures ( )

inlinevirtual

Definition at line 50 of file ProteinResidueConformationFeatures.hh.

Member Function Documentation

void protocols::features::ProteinResidueConformationFeatures::delete_record	(	boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 280 of file ProteinResidueConformationFeatures.cc.

utility::vector1< std::string > protocols::features::ProteinResidueConformationFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 155 of file ProteinResidueConformationFeatures.cc.

void protocols::features::ProteinResidueConformationFeatures::load_conformation	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

Definition at line 306 of file ProteinResidueConformationFeatures.cc.

References core::pose::Pose::is_fullatom(), core::chemical::ResidueType::is_protein(), core::chemical::ResidueType::nchi(), core::scoring::omega, protocols::swa::phi(), protocols::swa::psi(), core::pose::Pose::residue_type(), core::pose::Pose::set_chi(), set_coords_for_residues(), core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), core::pose::Pose::set_psi(), core::pose::Pose::set_secstruct(), and protocols::features::TR().

Referenced by load_into_pose().

void protocols::features::ProteinResidueConformationFeatures::load_into_pose	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 297 of file ProteinResidueConformationFeatures.cc.

References load_conformation().

Size protocols::features::ProteinResidueConformationFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)

virtual

void protocols::features::ProteinResidueConformationFeatures::set_coords_for_residues	(	utility::sql_database::sessionOP	db_session,
		boost::uuids::uuid	struct_id,
		core::pose::Pose &	pose
	)