protocols::toolbox::task_operations::RestrictNativeResiduesOperation Class Reference

#include <RestrictNativeResiduesOperation.hh>

Inheritance diagram for protocols::toolbox::task_operations::RestrictNativeResiduesOperation:

Collaboration diagram for protocols::toolbox::task_operations::RestrictNativeResiduesOperation:

Public Types
typedef std::string	String
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef core::pack::task::PackerTask	PackerTask
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
typedef utility::tag::TagPtr	TagPtr
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagPtr	TagPtr
typedef pose::Pose	Pose

Public Member Functions
	RestrictNativeResiduesOperation ()
	default constructor More...
	~RestrictNativeResiduesOperation ()
	destructor More...
virtual TaskOperationOP	clone () const
	make clone More...
void	parse_tag (TagPtr tag)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	apply (Pose const &pose, PackerTask &task) const
	apply More...
core::pose::PoseCOP	reference_pose () const
void	reference_pose (core::pose::PoseCOP reference_pose)
void	reference_pose (core::pose::Pose const &pose)
bool	verbose () const
void	verbose (bool const verb)
bool	prevent_repacking () const
void	prevent_repacking (bool const prev)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
virtual	~TaskOperation ()
virtual void	parse_def (utility::lua::LuaObject const &def)

Private Attributes
core::pose::PoseCOP	reference_pose_
bool	verbose_
bool	prevent_repacking_

Detailed Description

Definition at line 37 of file RestrictNativeResiduesOperation.hh.

Member Typedef Documentation

typedef core::pack::task::PackerTask protocols::toolbox::task_operations::RestrictNativeResiduesOperation::PackerTask

Definition at line 43 of file RestrictNativeResiduesOperation.hh.

typedef TaskOperation protocols::toolbox::task_operations::RestrictNativeResiduesOperation::parent

Definition at line 46 of file RestrictNativeResiduesOperation.hh.

typedef core::pose::Pose protocols::toolbox::task_operations::RestrictNativeResiduesOperation::Pose

Definition at line 42 of file RestrictNativeResiduesOperation.hh.

typedef core::Real protocols::toolbox::task_operations::RestrictNativeResiduesOperation::Real

Definition at line 41 of file RestrictNativeResiduesOperation.hh.

typedef std::string protocols::toolbox::task_operations::RestrictNativeResiduesOperation::String

Definition at line 40 of file RestrictNativeResiduesOperation.hh.

typedef utility::tag::TagPtr protocols::toolbox::task_operations::RestrictNativeResiduesOperation::TagPtr

Definition at line 47 of file RestrictNativeResiduesOperation.hh.

typedef core::pack::task::operation::TaskOperation protocols::toolbox::task_operations::RestrictNativeResiduesOperation::TaskOperation

Definition at line 44 of file RestrictNativeResiduesOperation.hh.

typedef core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::RestrictNativeResiduesOperation::TaskOperationOP

Definition at line 45 of file RestrictNativeResiduesOperation.hh.

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictNativeResiduesOperation::RestrictNativeResiduesOperation

(

)

default constructor

Definition at line 53 of file RestrictNativeResiduesOperation.cc.

Referenced by clone().

protocols::toolbox::task_operations::RestrictNativeResiduesOperation::~RestrictNativeResiduesOperation

(

)

destructor

Definition at line 62 of file RestrictNativeResiduesOperation.cc.

Member Function Documentation

void protocols::toolbox::task_operations::RestrictNativeResiduesOperation::apply ( Pose const &  pose, PackerTask &  task  ) const

virtual

apply

Loop over the residues in the current pose and restrict those that match the reference pose (ie, native residues) to repacking.

Implements core::pack::task::operation::TaskOperation.

Definition at line 115 of file RestrictNativeResiduesOperation.cc.

References core::pose::Pose::conformation(), core::conformation::Conformation::delete_residue_slow(), core::pose::symmetry::extract_asymmetric_unit(), core::pose::symmetry::is_symmetric(), core::chemical::ResidueType::name(), core::conformation::Residue::name3(), core::pack::task::PackerTask::nonconst_residue_task(), core::pack::task::ResidueLevelTask::prevent_repacking(), prevent_repacking_, reference_pose(), core::pose::Pose::residue(), core::pose::Pose::residue_type(), core::pack::task::ResidueLevelTask::restrict_to_repacking(), core::pose::Pose::total_residue(), protocols::TR(), and verbose_.

core::pack::task::operation::TaskOperationOP protocols::toolbox::task_operations::RestrictNativeResiduesOperation::clone ( ) const

virtual

make clone

clone

Implements core::pack::task::operation::TaskOperation.

Definition at line 66 of file RestrictNativeResiduesOperation.cc.

References RestrictNativeResiduesOperation().

void protocols::toolbox::task_operations::RestrictNativeResiduesOperation::parse_tag ( TagPtr  tag)

virtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

Definition at line 172 of file RestrictNativeResiduesOperation.cc.

References core::import_pose::pose_from_pdb(), prevent_repacking(), reference_pose(), protocols::TR(), and verbose().

bool protocols::toolbox::task_operations::RestrictNativeResiduesOperation::prevent_repacking

(

)

const

Definition at line 101 of file RestrictNativeResiduesOperation.cc.

References prevent_repacking_.

Referenced by parse_tag().

void protocols::toolbox::task_operations::RestrictNativeResiduesOperation::prevent_repacking

(

bool const

prev)

Definition at line 107 of file RestrictNativeResiduesOperation.cc.

References prevent_repacking_.

core::pose::PoseCOP protocols::toolbox::task_operations::RestrictNativeResiduesOperation::reference_pose

(

)

const

Definition at line 71 of file RestrictNativeResiduesOperation.cc.

References reference_pose_.

Referenced by apply(), and parse_tag().

void protocols::toolbox::task_operations::RestrictNativeResiduesOperation::reference_pose

(

core::pose::PoseCOP

reference_pose)

Definition at line 77 of file RestrictNativeResiduesOperation.cc.

References reference_pose_.

void protocols::toolbox::task_operations::RestrictNativeResiduesOperation::reference_pose

(

core::pose::Pose const &

pose)

Definition at line 83 of file RestrictNativeResiduesOperation.cc.

References reference_pose_.

bool protocols::toolbox::task_operations::RestrictNativeResiduesOperation::verbose

(

)

const

Definition at line 89 of file RestrictNativeResiduesOperation.cc.

References verbose_.

Referenced by parse_tag().

void protocols::toolbox::task_operations::RestrictNativeResiduesOperation::verbose

(

bool const

verb)

Definition at line 95 of file RestrictNativeResiduesOperation.cc.

References verbose_.

Member Data Documentation

bool protocols::toolbox::task_operations::RestrictNativeResiduesOperation::prevent_repacking_

private

Definition at line 78 of file RestrictNativeResiduesOperation.hh.

Referenced by apply(), and prevent_repacking().

core::pose::PoseCOP protocols::toolbox::task_operations::RestrictNativeResiduesOperation::reference_pose_

private

Definition at line 77 of file RestrictNativeResiduesOperation.hh.

Referenced by reference_pose().

bool protocols::toolbox::task_operations::RestrictNativeResiduesOperation::verbose_

private

Definition at line 78 of file RestrictNativeResiduesOperation.hh.

Referenced by apply(), and verbose().

---

The documentation for this class was generated from the following files:

• src/protocols/toolbox/task_operations/RestrictNativeResiduesOperation.hh
• src/protocols/toolbox/task_operations/RestrictNativeResiduesOperation.cc