core::scoring::DenseNeighborIterator Class Reference

#include <DenseEnergyContainer.hh>

Inheritance diagram for core::scoring::DenseNeighborIterator:

Collaboration diagram for core::scoring::DenseNeighborIterator:

Public Member Functions
virtual	~DenseNeighborIterator ()
	DenseNeighborIterator (Size const pos1_in, Size const pos2_in, ScoreType const st, ObjexxFCL::FArray2D< Real > *table_in, ObjexxFCL::FArray2D< bool > *computed_in)
virtual ResidueNeighborIterator const &	operator= (ResidueNeighborIterator const &src)
virtual ResidueNeighborIterator const &	operator++ ()
virtual bool	operator== (ResidueNeighborIterator const &other) const
virtual bool	operator!= (ResidueNeighborIterator const &other) const
virtual Size	upper_neighbor_id () const
virtual Size	lower_neighbor_id () const
virtual Size	residue_iterated_on () const
virtual Size	neighbor_id () const
virtual void	save_energy (EnergyMap const &emap)
virtual void	retrieve_energy (EnergyMap &emap) const
virtual void	accumulate_energy (EnergyMap &emap) const
virtual void	mark_energy_computed ()
virtual void	mark_energy_uncomputed ()
virtual bool	energy_computed () const
Public Member Functions inherited from core::scoring::ResidueNeighborIterator
virtual	~ResidueNeighborIterator ()

Private Attributes
Size	pos1_
Size	pos2_
ScoreType	score_type_
ObjexxFCL::FArray2D< Real > *	table_
ObjexxFCL::FArray2D< bool > *	computed_

Detailed Description

Definition at line 40 of file DenseEnergyContainer.hh.

Constructor & Destructor Documentation

virtual core::scoring::DenseNeighborIterator::~DenseNeighborIterator ( )

inlinevirtual

Definition at line 43 of file DenseEnergyContainer.hh.

core::scoring::DenseNeighborIterator::DenseNeighborIterator ( Size const  pos1_in, Size const  pos2_in, ScoreType const  st, ObjexxFCL::FArray2D< Real > *  table_in, ObjexxFCL::FArray2D< bool > *  computed_in  )

inline

Definition at line 45 of file DenseEnergyContainer.hh.

Member Function Documentation

virtual void core::scoring::DenseNeighborIterator::accumulate_energy ( EnergyMap &  emap) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 120 of file DenseEnergyContainer.hh.

References pos1_, pos2_, and score_type_.

virtual bool core::scoring::DenseNeighborIterator::energy_computed ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 137 of file DenseEnergyContainer.hh.

References computed_, pos1_, and pos2_.

virtual Size core::scoring::DenseNeighborIterator::lower_neighbor_id ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 93 of file DenseEnergyContainer.hh.

References pos1_, and pos2_.

virtual void core::scoring::DenseNeighborIterator::mark_energy_computed ( )

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 125 of file DenseEnergyContainer.hh.

References pos1_, and pos2_.

virtual void core::scoring::DenseNeighborIterator::mark_energy_uncomputed ( )

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 131 of file DenseEnergyContainer.hh.

References pos1_, and pos2_.

virtual Size core::scoring::DenseNeighborIterator::neighbor_id ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 103 of file DenseEnergyContainer.hh.

References pos2_.

Referenced by operator==().

virtual bool core::scoring::DenseNeighborIterator::operator!= ( ResidueNeighborIterator const &  other) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 83 of file DenseEnergyContainer.hh.

virtual ResidueNeighborIterator const& core::scoring::DenseNeighborIterator::operator++ ( )

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 70 of file DenseEnergyContainer.hh.

References pos1_, and pos2_.

virtual ResidueNeighborIterator const& core::scoring::DenseNeighborIterator::operator= ( ResidueNeighborIterator const &  src)

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 59 of file DenseEnergyContainer.hh.

References computed_, pos1_, pos2_, and table_.

virtual bool core::scoring::DenseNeighborIterator::operator== ( ResidueNeighborIterator const &  other) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 77 of file DenseEnergyContainer.hh.

References core::scoring::ResidueNeighborIterator::neighbor_id(), neighbor_id(), core::scoring::ResidueNeighborIterator::residue_iterated_on(), and residue_iterated_on().

virtual Size core::scoring::DenseNeighborIterator::residue_iterated_on ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 98 of file DenseEnergyContainer.hh.

References pos1_.

Referenced by operator==().

virtual void core::scoring::DenseNeighborIterator::retrieve_energy ( EnergyMap &  emap) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 115 of file DenseEnergyContainer.hh.

References pos1_, pos2_, and score_type_.

virtual void core::scoring::DenseNeighborIterator::save_energy ( EnergyMap const &  emap)

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 108 of file DenseEnergyContainer.hh.

References pos1_, pos2_, and score_type_.

virtual Size core::scoring::DenseNeighborIterator::upper_neighbor_id ( ) const

inlinevirtual

Implements core::scoring::ResidueNeighborIterator.

Definition at line 88 of file DenseEnergyContainer.hh.

References pos1_, and pos2_.

Member Data Documentation

ObjexxFCL::FArray2D< bool >* core::scoring::DenseNeighborIterator::computed_

private

Definition at line 147 of file DenseEnergyContainer.hh.

Referenced by energy_computed(), and operator=().

Size core::scoring::DenseNeighborIterator::pos1_

private

Definition at line 143 of file DenseEnergyContainer.hh.

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), operator++(), operator=(), residue_iterated_on(), retrieve_energy(), save_energy(), and upper_neighbor_id().

Size core::scoring::DenseNeighborIterator::pos2_

private

Definition at line 144 of file DenseEnergyContainer.hh.

Referenced by accumulate_energy(), energy_computed(), lower_neighbor_id(), mark_energy_computed(), mark_energy_uncomputed(), neighbor_id(), operator++(), operator=(), retrieve_energy(), save_energy(), and upper_neighbor_id().

ScoreType core::scoring::DenseNeighborIterator::score_type_

private

Definition at line 145 of file DenseEnergyContainer.hh.

Referenced by accumulate_energy(), retrieve_energy(), and save_energy().

ObjexxFCL::FArray2D< Real >* core::scoring::DenseNeighborIterator::table_

private

Definition at line 146 of file DenseEnergyContainer.hh.

Referenced by operator=().

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The documentation for this class was generated from the following file:

• src/core/scoring/DenseEnergyContainer.hh