SequenceRecoveryFilter.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 sw=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file protocols/simple_filters/ContingentFilter.hh
/// @brief A filter that is contingent on some other mover to set its pass/fail value
/// @author Sarel Fleishman (sarelf@uw.edu)

#ifndef INCLUDED_protocols_protein_interface_design_filters_SequenceRecoveryFilter_hh
#define INCLUDED_protocols_protein_interface_design_filters_SequenceRecoveryFilter_hh


// Project Headers
#include <protocols/filters/Filter.hh>
#include <core/pose/Pose.fwd.hh>
#include <utility/tag/Tag.fwd.hh>
#include <protocols/moves/DataMap.fwd.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/protein_interface_design/filters/SequenceRecoveryFilter.fwd.hh>

#include <core/pack/task/TaskFactory.fwd.hh>
#include <utility/vector1.hh>

// Unit headers

namespace protocols {
namespace protein_interface_design{
namespace filters {

class SequenceRecoveryFilter : public protocols::filters::Filter
{
private:
  typedef protocols::filters::Filter parent;
public:
  /// @brief default ctor
  SequenceRecoveryFilter();
  ///@brief Constructor with a single target residue
  virtual bool apply( core::pose::Pose const & pose ) const;
  virtual void apply( core::io::serialization::PipeMap & pmap);
  virtual void report( std::ostream & out, core::pose::Pose const & pose ) const;
  virtual core::Real report_sm( core::pose::Pose const & pose ) const;
  virtual protocols::filters::FilterOP clone() const;
  virtual protocols::filters::FilterOP fresh_instance() const;
  core::Real compute( core::pose::Pose const & pose, bool const & write ) const;
  void write_to_pdb(
    std::map< core::Size, std::string > const & res_names1,
    std::map< core::Size, std::string > const & res_names2 ) const;
  virtual ~SequenceRecoveryFilter();
  core::pack::task::TaskFactoryOP task_factory() const;
  void task_factory( core::pack::task::TaskFactoryOP task_factory );
  core::Real rate_threshold() const;
  void rate_threshold( core::Real const rate );
  core::Size mutation_threshold() const;
  void mutation_threshold( core::Size const mut );
  bool mutations() const;
  void mutations( bool const muts );
  bool verbose() const;
  void verbose( bool const verb );
  bool write2pdb() const;
  void write2pdb( bool const write );
  core::pose::PoseCOP reference_pose() const;
  void reference_pose( core::pose::PoseCOP reference_pose );
  void reference_pose( core::pose::Pose const & pose );
  void parse_my_tag( utility::tag::TagPtr const tag,
    protocols::moves::DataMap &,
    protocols::filters::Filters_map const &,
    protocols::moves::Movers_map const &,
    core::pose::Pose const & );
  void parse_def( utility::lua::LuaObject const & def,
          utility::lua::LuaObject const & score_fxns,
          utility::lua::LuaObject const & tasks );
private:
  core::pack::task::TaskFactoryOP task_factory_;
  core::pose::PoseCOP reference_pose_;
  core::Real rate_threshold_;
  core::Size mutation_threshold_;
  bool mutations_;
  bool verbose_;
  bool write2pdb_;
};

} // filters
} //protein_interface_design
} // protocols

#endif //INCLUDED_protocols_Filters_SequenceRecoveryFilter_HH_