protocols::fldsgn::topology::DimerPairing Class Reference

#include <DimerPairing.hh>

Inheritance diagram for protocols::fldsgn::topology::DimerPairing:

Collaboration diagram for protocols::fldsgn::topology::DimerPairing:

Public Types
typedef core::Size	Size
typedef core::Real	Real

Public Member Functions
virtual	~DimerPairing ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
	DimerPairing (Size const res1, Size const res2, Real const dist, Real const phi, Real const theta, Real const sigma, Real const dp, Size const sign1, Size const sign2, Real const score)
Size	res1 () const
Size	res2 () const
Real	dist () const
Real	phi () const
Real	theta () const
Real	dp () const
Real	sigma () const
Size	sign1 () const
Size	sign2 () const
Real	score () const
char	orient () const
bool	valid () const
void	valid (bool const v)
bool	is_parallel (Real const phi, Real const theta)
	the pairing is parallel ? More...

Private Attributes
Size	res1_
Size	res2_
Real	dist_
Real	phi_
Real	theta_
Real	sigma_
Real	dp_
Size	sign1_
Size	sign2_
Real	score_
char	orient_
bool	valid_

Friends
std::ostream &	operator<< (std::ostream &out, const DimerPairing &dp)

Detailed Description

Definition at line 31 of file DimerPairing.hh.

Member Typedef Documentation

typedef core::Real protocols::fldsgn::topology::DimerPairing::Real

Definition at line 38 of file DimerPairing.hh.

typedef core::Size protocols::fldsgn::topology::DimerPairing::Size

Definition at line 37 of file DimerPairing.hh.

Constructor & Destructor Documentation

protocols::fldsgn::topology::DimerPairing::~DimerPairing ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Definition at line 31 of file DimerPairing.cc.

protocols::fldsgn::topology::DimerPairing::DimerPairing	(	Size const	res1,
		Size const	res2,
		Real const	dist,
		Real const	phi,
		Real const	theta,
		Real const	sigma,
		Real const	dp,
		Size const	sign1,
		Size const	sign2,
		Real const	score
	)

Definition at line 35 of file DimerPairing.cc.

References is_parallel(), and orient_.

Member Function Documentation

Real protocols::fldsgn::topology::DimerPairing::dist ( ) const

inline

Definition at line 68 of file DimerPairing.hh.

References dist_.

Referenced by protocols::fldsgn::topology::operator<<().

Real protocols::fldsgn::topology::DimerPairing::dp ( ) const

inline

Definition at line 86 of file DimerPairing.hh.

References dp_.

Referenced by protocols::fldsgn::topology::operator<<().

bool protocols::fldsgn::topology::DimerPairing::is_parallel	(	Real const	phi,
		Real const	theta
	)

the pairing is parallel ?

Definition at line 69 of file DimerPairing.cc.

Referenced by DimerPairing().

char protocols::fldsgn::topology::DimerPairing::orient ( ) const

inline

Definition at line 116 of file DimerPairing.hh.

References orient_.

Referenced by protocols::fldsgn::topology::StrandPairingSet::initialize_by_dimer_pairs(), and protocols::fldsgn::topology::operator<<().

Real protocols::fldsgn::topology::DimerPairing::phi ( ) const

inline

Definition at line 74 of file DimerPairing.hh.

References phi_.

Referenced by protocols::fldsgn::topology::operator<<().

Size protocols::fldsgn::topology::DimerPairing::res1 ( ) const

inline

Definition at line 56 of file DimerPairing.hh.

References res1_.

Referenced by protocols::fldsgn::topology::DimerPairings::finalize(), protocols::fldsgn::topology::StrandPairingSet::initialize_by_dimer_pairs(), protocols::fldsgn::topology::operator<<(), and protocols::fldsgn::potentials::sspot::SSPairPotential::score().

Size protocols::fldsgn::topology::DimerPairing::res2 ( ) const

inline

Definition at line 62 of file DimerPairing.hh.

References res2_.

Referenced by protocols::fldsgn::topology::DimerPairings::finalize(), protocols::fldsgn::topology::StrandPairingSet::initialize_by_dimer_pairs(), protocols::fldsgn::topology::operator<<(), and protocols::fldsgn::potentials::sspot::SSPairPotential::score().

Real protocols::fldsgn::topology::DimerPairing::score ( ) const

inline

Definition at line 110 of file DimerPairing.hh.

References score_.

Referenced by protocols::fldsgn::topology::operator<<(), and protocols::fldsgn::potentials::sspot::SSPairPotential::score().

Real protocols::fldsgn::topology::DimerPairing::sigma ( ) const

inline

Definition at line 92 of file DimerPairing.hh.

References sigma_.

Referenced by protocols::fldsgn::topology::operator<<().

Size protocols::fldsgn::topology::DimerPairing::sign1 ( ) const

inline

Definition at line 98 of file DimerPairing.hh.

References sign1_.

Referenced by protocols::fldsgn::topology::DimerPairings::finalize(), protocols::fldsgn::topology::StrandPairingSet::initialize_by_dimer_pairs(), and protocols::fldsgn::topology::operator<<().

Size protocols::fldsgn::topology::DimerPairing::sign2 ( ) const

inline

Definition at line 104 of file DimerPairing.hh.

References sign2_.

Referenced by protocols::fldsgn::topology::DimerPairings::finalize(), protocols::fldsgn::topology::StrandPairingSet::initialize_by_dimer_pairs(), and protocols::fldsgn::topology::operator<<().

Real protocols::fldsgn::topology::DimerPairing::theta ( ) const

inline

Definition at line 80 of file DimerPairing.hh.

References theta_.

Referenced by protocols::fldsgn::topology::operator<<().

bool protocols::fldsgn::topology::DimerPairing::valid ( ) const

inline

Definition at line 122 of file DimerPairing.hh.

References valid_.

Referenced by protocols::fldsgn::topology::DimerPairings::finalize(), and protocols::fldsgn::potentials::sspot::SSPairPotential::score().

void protocols::fldsgn::topology::DimerPairing::valid ( bool const  v)

inline

Definition at line 128 of file DimerPairing.hh.

References valid_.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, const DimerPairing &  dp  )

friend

Definition at line 87 of file DimerPairing.cc.

Member Data Documentation

Real protocols::fldsgn::topology::DimerPairing::dist_

private

Definition at line 153 of file DimerPairing.hh.

Referenced by dist().

Real protocols::fldsgn::topology::DimerPairing::dp_

private

Definition at line 157 of file DimerPairing.hh.

Referenced by dp().

char protocols::fldsgn::topology::DimerPairing::orient_

private

Definition at line 161 of file DimerPairing.hh.

Referenced by DimerPairing(), and orient().

Real protocols::fldsgn::topology::DimerPairing::phi_

private

Definition at line 154 of file DimerPairing.hh.

Referenced by phi().

Size protocols::fldsgn::topology::DimerPairing::res1_

private

Definition at line 151 of file DimerPairing.hh.

Referenced by res1().

Size protocols::fldsgn::topology::DimerPairing::res2_

private

Definition at line 152 of file DimerPairing.hh.

Referenced by res2().

Real protocols::fldsgn::topology::DimerPairing::score_

private

Definition at line 160 of file DimerPairing.hh.

Referenced by score().

Real protocols::fldsgn::topology::DimerPairing::sigma_

private

Definition at line 156 of file DimerPairing.hh.

Referenced by sigma().

Size protocols::fldsgn::topology::DimerPairing::sign1_

private

Definition at line 158 of file DimerPairing.hh.

Referenced by sign1().

Size protocols::fldsgn::topology::DimerPairing::sign2_

private

Definition at line 159 of file DimerPairing.hh.

Referenced by sign2().

Real protocols::fldsgn::topology::DimerPairing::theta_

private

Definition at line 155 of file DimerPairing.hh.

Referenced by theta().

bool protocols::fldsgn::topology::DimerPairing::valid_

private

Definition at line 162 of file DimerPairing.hh.

Referenced by valid().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/topology/DimerPairing.hh
• src/protocols/fldsgn/topology/DimerPairing.cc