protocols::symmetric_docking::SymDockProtocol Member List

This is the complete list of members for protocols::symmetric_docking::SymDockProtocol, including all inherited members.

apply(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
autofoldtree_	protocols::symmetric_docking::SymDockProtocol	private
calc_interaction_energy(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
calc_rms(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
classic_mcm_protocol(core::pose::Pose &pose, core::scoring::symmetry::SymmetricScoreFunctionOP scorefxn, protocols::moves::MonteCarloOP monteCarlo, core::Size num_cycles, core::Size repack_every_Nth) const	protocols::symmetric_docking::SymDockProtocol	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::symmetric_docking::SymDockProtocol	virtual
create()	protocols::moves::Mover	virtual
design(bool const des)	protocols::symmetric_docking::SymDockProtocol
design() const	protocols::symmetric_docking::SymDockProtocol
design_	protocols::symmetric_docking::SymDockProtocol	private
dock_ppk_	protocols::symmetric_docking::SymDockProtocol	private
docking_high_	protocols::symmetric_docking::SymDockProtocol	private
docking_highres_filter(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
docking_low_	protocols::symmetric_docking::SymDockProtocol	private
docking_lowres_filter(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
docking_score_high_	protocols::symmetric_docking::SymDockProtocol	private
docking_score_high_min_	protocols::symmetric_docking::SymDockProtocol	private
docking_score_low_	protocols::symmetric_docking::SymDockProtocol	private
docking_score_pack_	protocols::symmetric_docking::SymDockProtocol	private
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::moves::Mover	virtual
fullatom_	protocols::symmetric_docking::SymDockProtocol	private
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::symmetric_docking::SymDockProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
hurry(bool const hurry)	protocols::symmetric_docking::SymDockProtocol
hurry_	protocols::symmetric_docking::SymDockProtocol	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init_task_factory_	protocols::symmetric_docking::SymDockProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
local_refine_	protocols::symmetric_docking::SymDockProtocol	private
make_dockmcm_mover(core::pose::Pose const &pose, protocols::moves::MoverOP repack_mover, protocols::moves::MoverOP rigbod_mover, core::kinematics::MoveMapOP movemap, core::scoring::symmetry::SymmetricScoreFunctionOP scorefxn, protocols::moves::MonteCarloOP monteCarlo) const	protocols::symmetric_docking::SymDockProtocol	private
max_repeats_	protocols::symmetric_docking::SymDockProtocol	private
mc_	protocols::symmetric_docking::SymDockProtocol	private
movable_jumps_	protocols::symmetric_docking::SymDockProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
passed_highres_filter_	protocols::symmetric_docking::SymDockProtocol	private
passed_lowres_filter_	protocols::symmetric_docking::SymDockProtocol	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
recover_sidechains(core::pose::Pose &pose, const core::pose::Pose &native_pose)	protocols::symmetric_docking::SymDockProtocol
register_options()	protocols::symmetric_docking::SymDockProtocol
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
rtmin_	protocols::symmetric_docking::SymDockProtocol	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
sc_min_	protocols::symmetric_docking::SymDockProtocol	private
score_map_	protocols::symmetric_docking::SymDockProtocol	private
score_only(core::pose::Pose &pose)	protocols::symmetric_docking::SymDockProtocol
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_default()	protocols::symmetric_docking::SymDockProtocol
set_dock_ppk(bool dock_ppk_in)	protocols::symmetric_docking::SymDockProtocol
set_dock_rtmin(bool dock_rtmin_in)	protocols::symmetric_docking::SymDockProtocol
set_fullatom(bool const fullatom_in)	protocols::symmetric_docking::SymDockProtocol
set_highres_scorefxn(core::scoring::ScoreFunctionOP docking_score_high_in)	protocols::symmetric_docking::SymDockProtocol
set_highres_scorefxn(core::scoring::ScoreFunctionOP docking_score_high_in, core::scoring::ScoreFunctionOP docking_score_pack_in)	protocols::symmetric_docking::SymDockProtocol
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_local_refine(bool const local_refine_in)	protocols::symmetric_docking::SymDockProtocol
set_lowres_scorefxn(core::scoring::ScoreFunctionOP docking_score_low_in)	protocols::symmetric_docking::SymDockProtocol
set_max_repeats(Size const max_repeats_in)	protocols::symmetric_docking::SymDockProtocol
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_sc_min(bool sc_min_in)	protocols::symmetric_docking::SymDockProtocol
set_view(bool view_in)	protocols::symmetric_docking::SymDockProtocol
Strings typedef	protocols::moves::Mover
SymDockProtocol()	protocols::symmetric_docking::SymDockProtocol
SymDockProtocol(bool const fullatom, bool const local_refine, bool const view=false)	protocols::symmetric_docking::SymDockProtocol
SymDockProtocol(bool const fullatom, bool const local_refine, bool const view, core::scoring::ScoreFunctionOP docking_score_low, core::scoring::ScoreFunctionOP docking_score_high)	protocols::symmetric_docking::SymDockProtocol
SymmetricConformation typedef	protocols::symmetric_docking::SymDockProtocol
SymmetryInfo typedef	protocols::symmetric_docking::SymDockProtocol
TagPtr typedef	protocols::moves::Mover
task_factory(core::pack::task::TaskFactoryOP task_factory)	protocols::symmetric_docking::SymDockProtocol
task_factory() const	protocols::symmetric_docking::SymDockProtocol
task_factory()	protocols::symmetric_docking::SymDockProtocol
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
view_	protocols::symmetric_docking::SymDockProtocol	private
~Mover()	protocols::moves::Mover	virtual
~SymDockProtocol()	protocols::symmetric_docking::SymDockProtocol	virtual