| add_target_ | protocols::seeded_abinitio::SeedFoldTree | private |
| all_seeds_ | protocols::seeded_abinitio::SeedFoldTree | private |
| anchor_specified(bool anchor_specified) | protocols::seeded_abinitio::SeedFoldTree | |
| anchor_specified() | protocols::seeded_abinitio::SeedFoldTree | |
| anchor_specified_ | protocols::seeded_abinitio::SeedFoldTree | private |
| anchors_ | protocols::seeded_abinitio::SeedFoldTree | private |
| apply(core::pose::Pose &pose) | protocols::seeded_abinitio::SeedFoldTree | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| best_by_ala_scan(core::Size start, core::Size end, core::pose::PoseOP &ts_pose) | protocols::seeded_abinitio::SeedFoldTree | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::seeded_abinitio::SeedFoldTree | virtual |
| create() | protocols::moves::Mover | virtual |
| cut_points_ | protocols::seeded_abinitio::SeedFoldTree | private |
| ddg_based() | protocols::seeded_abinitio::SeedFoldTree | |
| ddg_based(bool ddgb) | protocols::seeded_abinitio::SeedFoldTree | |
| ddg_based_ | protocols::seeded_abinitio::SeedFoldTree | private |
| Filters_map typedef | protocols::moves::Mover | |
| fold_tree(core::kinematics::FoldTreeOP ft) | protocols::seeded_abinitio::SeedFoldTree | |
| fold_tree() const | protocols::seeded_abinitio::SeedFoldTree | |
| fold_tree_ | protocols::seeded_abinitio::SeedFoldTree | private |
| folding_verteces_ | protocols::seeded_abinitio::SeedFoldTree | private |
| fresh_instance() const | protocols::seeded_abinitio::SeedFoldTree | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_cutpoints() | protocols::seeded_abinitio::SeedFoldTree | |
| get_folding_verteces() | protocols::seeded_abinitio::SeedFoldTree | |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::seeded_abinitio::SeedFoldTree | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| manual_jump_pairs_ | protocols::seeded_abinitio::SeedFoldTree | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| only_seeds_chain_ | protocols::seeded_abinitio::SeedFoldTree | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) | protocols::seeded_abinitio::SeedFoldTree | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| pdb_contains_target_ | protocols::seeded_abinitio::SeedFoldTree | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn() const | protocols::seeded_abinitio::SeedFoldTree | |
| scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::seeded_abinitio::SeedFoldTree | |
| scorefxn_ | protocols::seeded_abinitio::SeedFoldTree | private |
| SeedFoldTree() | protocols::seeded_abinitio::SeedFoldTree | |
| SeedFoldTree(core::kinematics::FoldTreeOP ft) | protocols::seeded_abinitio::SeedFoldTree | |
| seeds_only_ | protocols::seeded_abinitio::SeedFoldTree | private |
| set_anchor_res(utility::vector1< core::Size > anchor) | protocols::seeded_abinitio::SeedFoldTree | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_foldtree(core::pose::PoseOP &seed_target_chain, std::string secstr, protocols::loops::Loops &loops, bool protein_not_folded_yet) | protocols::seeded_abinitio::SeedFoldTree | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_jumps_manually | protocols::seeded_abinitio::SeedFoldTree | private |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| target_chain_ | protocols::seeded_abinitio::SeedFoldTree | private |
| template_pdb_ | protocols::seeded_abinitio::SeedFoldTree | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| twochains_ | protocols::seeded_abinitio::SeedFoldTree | private |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~SeedFoldTree() | protocols::seeded_abinitio::SeedFoldTree | virtual |
1.8.4