AmberPeriodicFunc.cc

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// vi: set ts=2 noet:
//
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/// @file src/core/scoring/constraints/AmberPeriodicFunc.cc
/// @brief Definition for periodic functions
/// @author Florian Richter, floric@u.washington.edu


#include <core/scoring/constraints/AmberPeriodicFunc.hh>

#include <math.h>

#include <iostream>


namespace core {
namespace scoring {
namespace constraints {


Real
AmberPeriodicFunc::func( Real const x ) const
{
  return k_ * (1 + cos( ( n_periodic_ * x ) - x0_ ) );
}

Real
AmberPeriodicFunc::dfunc( Real const x ) const
{
  return -1.0 * k_ * n_periodic_ * sin( ( n_periodic_ * x ) - x0_ );
}

void
AmberPeriodicFunc::read_data( std::istream& in )
{
  in >> x0_ >> n_periodic_ >> k_;
}

void
AmberPeriodicFunc::show_definition(std::ostream &out ) const
{
  out << "AMBER_PERIODIC " << x0_ << " " << n_periodic_ << " " << k_ << std::endl;
}

//copied from HarmonicFunc.cc
Size
AmberPeriodicFunc::show_violations( std::ostream& out, Real x, Size verbose_level, Real threshold) const
{
  if (verbose_level > 100 ) {
    out << "AMBER PERIODIC " <<  func(x) << std::endl;
  }
  return Func::show_violations( out, x, verbose_level, threshold);

}


} //constraints
} //scoring
} //core