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Rosetta 3.5
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Rosetta 3.5
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#include <PairFeatures.hh>
Public Member Functions | |
| PairFeatures () | |
| PairFeatures (PairFeatures const &src) | |
| virtual | ~PairFeatures () |
| std::string | type_name () const |
| return string with class name More... | |
| void | write_schema_to_db (utility::sql_database::sessionOP db_session) const |
| generate the table schemas and write them to the database More... | |
| utility::vector1< std::string > | features_reporter_dependencies () const |
| return the set of features reporters that are required to also already be extracted by the time this one is used. More... | |
| core::Size | report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session) |
| collect all the feature data for the pose More... | |
| void | report_residue_pairs (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid const struct_id, utility::sql_database::sessionOP db_session) |
 Public Member Functions inherited from protocols::features::FeaturesReporter | |
| virtual | ~FeaturesReporter () |
| Automatically generated virtual destructor for class deriving directly from ReferenceCount. More... | |
| virtual std::string | schema () const |
| return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More... | |
| core::Size | report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP) |
| collect all the feature data for the pose. More... | |
| virtual void | parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &) |
| virtual void | load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &) |
| virtual void | delete_record (boost::uuids::uuid, utility::sql_database::sessionOP) |
Private Member Functions | |
| void | write_residue_pairs_table_schema (utility::sql_database::sessionOP db_session) const |
| generate the beta_turns table schema More... | |
Additional Inherited Members | |
| Protected Member Functions inherited from protocols::features::FeaturesReporter | |
| std::string | find_tag (core::pose::Pose const &pose) const |
| void | delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session) |
| a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More... | |
Definition at line 38 of file PairFeatures.hh.
| protocols::features::PairFeatures::PairFeatures | ( | ) |
Definition at line 58 of file PairFeatures.cc.
| protocols::features::PairFeatures::PairFeatures | ( | PairFeatures const & | src) |
Definition at line 60 of file PairFeatures.cc.
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virtual |
Definition at line 64 of file PairFeatures.cc.
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virtual |
return the set of features reporters that are required to also already be extracted by the time this one is used.
Reimplemented from protocols::features::FeaturesReporter.
Definition at line 135 of file PairFeatures.cc.
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collect all the feature data for the pose
Implements protocols::features::FeaturesReporter.
Definition at line 143 of file PairFeatures.cc.
References report_residue_pairs().
| void protocols::features::PairFeatures::report_residue_pairs | ( | core::pose::Pose const & | pose, |
| utility::vector1< bool > const & | relevant_residues, | ||
| boost::uuids::uuid const | struct_id, | ||
| utility::sql_database::sessionOP | db_session | ||
| ) |
Definition at line 154 of file PairFeatures.cc.
References core::pose::Pose::conformation(), core::pose::Pose::energies(), core::pose::Pose::residue(), core::scoring::Energies::residue_neighbors_updated(), core::conformation::Conformation::structure_moved(), core::scoring::Energies::tenA_neighbor_graph(), and core::pose::Pose::total_residue().
Referenced by report_features().
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return string with class name
Reimplemented from protocols::features::FeaturesReporter.
Definition at line 67 of file PairFeatures.cc.
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private |
generate the beta_turns table schema
Definition at line 77 of file PairFeatures.cc.
Referenced by write_schema_to_db().
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virtual |
generate the table schemas and write them to the database
Implements protocols::features::FeaturesReporter.
Definition at line 70 of file PairFeatures.cc.
References write_residue_pairs_table_schema().
1.8.4