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Rosetta 3.5
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All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
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Rosetta 3.5
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#include <core/scoring/NeighborList.hh>#include <core/scoring/ScoreFunction.hh>#include <core/scoring/etable/count_pair/CountPairFunction.hh>#include <core/conformation/Conformation.hh>#include <core/pose/Pose.hh>#include <core/pose/util.hh>#include <basic/prof.hh>#include <core/conformation/find_neighbors.hh>#include <core/conformation/PointGraph.hh>#include <platform/types.hh>#include <core/types.hh>#include <core/chemical/AA.hh>#include <core/chemical/Adduct.fwd.hh>#include <core/chemical/Adduct.hh>#include <core/chemical/AtomICoor.fwd.hh>#include <core/chemical/AtomICoor.hh>#include <core/chemical/AtomType.fwd.hh>#include <core/chemical/AtomType.hh>#include <core/chemical/AtomTypeSet.fwd.hh>#include <core/chemical/ElementSet.fwd.hh>#include <core/chemical/MMAtomType.fwd.hh>#include <core/chemical/MMAtomTypeSet.fwd.hh>#include <core/chemical/ResConnID.fwd.hh>#include <core/chemical/ResConnID.hh>#include <core/chemical/ResidueConnection.fwd.hh>#include <core/chemical/ResidueConnection.hh>#include <core/chemical/ResidueType.fwd.hh>#include <core/chemical/ResidueType.hh>#include <core/chemical/ResidueTypeSet.fwd.hh>#include <core/chemical/VariantType.fwd.hh>#include <core/chemical/types.hh>#include <core/chemical/orbitals/ICoorOrbitalData.hh>#include <core/chemical/orbitals/OrbitalType.fwd.hh>#include <core/chemical/orbitals/OrbitalTypeSet.fwd.hh>#include <core/chemical/sdf/MolData.fwd.hh>#include <core/chemical/sdf/MolData.hh>#include <core/conformation/Atom.fwd.hh>#include <core/conformation/Atom.hh>#include <core/conformation/Conformation.fwd.hh>#include <core/conformation/PointGraph.fwd.hh>#include <core/conformation/PointGraphData.fwd.hh>#include <core/conformation/PointGraphData.hh>#include <core/conformation/PseudoBond.fwd.hh>#include <core/conformation/Residue.fwd.hh>#include <core/conformation/Residue.hh>#include <core/conformation/RotamerSetBase.fwd.hh>#include <core/conformation/find_neighbors.fwd.hh>#include <core/conformation/orbitals/OrbitalXYZCoords.hh>#include <core/conformation/signals/ConnectionEvent.fwd.hh>#include <core/conformation/signals/ConnectionEvent.hh>#include <core/conformation/signals/GeneralEvent.fwd.hh>#include <core/conformation/signals/GeneralEvent.hh>#include <core/conformation/signals/IdentityEvent.fwd.hh>#include <core/conformation/signals/IdentityEvent.hh>#include <core/conformation/signals/LengthEvent.fwd.hh>#include <core/conformation/signals/LengthEvent.hh>#include <core/conformation/signals/XYZEvent.fwd.hh>#include <core/conformation/signals/XYZEvent.hh>#include <core/graph/UpperEdgeGraph.fwd.hh>#include <core/graph/UpperEdgeGraph.hh>#include <core/id/AtomID.fwd.hh>#include <core/id/AtomID.hh>#include <core/id/AtomID_Map.fwd.hh>#include <core/id/AtomID_Map.hh>#include <core/id/AtomID_Mask.fwd.hh>#include <core/id/DOF_ID.fwd.hh>#include <core/id/DOF_ID.hh>#include <core/id/DOF_ID_Map.fwd.hh>#include <core/id/DOF_ID_Map.hh>#include <core/id/DOF_ID_Mask.fwd.hh>#include <core/id/NamedAtomID.fwd.hh>#include <core/id/NamedAtomID.hh>#include <core/id/NamedStubID.fwd.hh>#include <core/id/SequenceMapping.fwd.hh>#include <core/id/TorsionID.fwd.hh>#include <core/id/types.hh>#include <core/kinematics/AtomPointer.fwd.hh>#include <core/kinematics/AtomTree.fwd.hh>#include <core/kinematics/AtomTree.hh>#include <core/kinematics/AtomWithDOFChange.fwd.hh>#include <core/kinematics/DomainMap.fwd.hh>#include <core/kinematics/Edge.fwd.hh>#include <core/kinematics/Edge.hh>#include <core/kinematics/FoldTree.fwd.hh>#include <core/kinematics/FoldTree.hh>#include <core/kinematics/Jump.fwd.hh>#include <core/kinematics/Jump.hh>#include <core/kinematics/MinimizerMapBase.fwd.hh>#include <core/kinematics/MoveMap.fwd.hh>#include <core/kinematics/RT.fwd.hh>#include <core/kinematics/RT.hh>#include <core/kinematics/ResidueCoordinateChangeList.fwd.hh>#include <core/kinematics/Stub.fwd.hh>#include <core/kinematics/Stub.hh>#include <core/kinematics/tree/Atom.fwd.hh>#include <core/kinematics/tree/Atom.hh>#include <core/pose/MiniPose.fwd.hh>#include <core/pose/PDBInfo.fwd.hh>#include <core/pose/Pose.fwd.hh>#include <core/pose/datacache/ObserverCache.fwd.hh>#include <core/pose/metrics/PoseMetricContainer.fwd.hh>#include <core/pose/signals/ConformationEvent.fwd.hh>#include <core/pose/signals/DestructionEvent.fwd.hh>#include <core/pose/signals/EnergyEvent.fwd.hh>#include <core/pose/signals/GeneralEvent.fwd.hh>#include <core/scoring/Energies.fwd.hh>#include <core/scoring/EnergyGraph.fwd.hh>#include <core/scoring/EnergyMap.fwd.hh>#include <core/scoring/EnergyMap.hh>#include <core/scoring/LREnergyContainer.fwd.hh>#include <core/scoring/MinimizationGraph.fwd.hh>#include <core/scoring/NeighborList.fwd.hh>#include <core/scoring/ScoreFunction.fwd.hh>#include <core/scoring/ScoreFunctionInfo.fwd.hh>#include <core/scoring/ScoreType.hh>#include <core/scoring/constraints/Constraint.fwd.hh>#include <core/scoring/constraints/ConstraintSet.fwd.hh>#include <core/scoring/etable/EtableEnergy.fwd.hh>#include <core/scoring/etable/count_pair/CountPairFunction.fwd.hh>#include <core/scoring/methods/ContextDependentLRTwoBodyEnergy.fwd.hh>#include <core/scoring/methods/ContextDependentOneBodyEnergy.fwd.hh>#include <core/scoring/methods/ContextDependentTwoBodyEnergy.fwd.hh>#include <core/scoring/methods/ContextIndependentLRTwoBodyEnergy.fwd.hh>#include <core/scoring/methods/ContextIndependentOneBodyEnergy.fwd.hh>#include <core/scoring/methods/ContextIndependentTwoBodyEnergy.fwd.hh>#include <core/scoring/methods/EnergyMethod.fwd.hh>#include <core/scoring/methods/EnergyMethodOptions.fwd.hh>#include <core/scoring/methods/LongRangeTwoBodyEnergy.fwd.hh>#include <core/scoring/methods/TwoBodyEnergy.fwd.hh>#include <core/scoring/methods/WholeStructureEnergy.fwd.hh>#include <utility/Bound.fwd.hh>#include <utility/Bound.hh>#include <utility/down_cast.hh>#include <utility/exit.hh>#include <utility/stream_util.hh>#include <utility/string_util.hh>#include <utility/vector0_bool.hh>#include <utility/vector1.fwd.hh>#include <utility/vector1.hh>#include <utility/vector1_bool.hh>#include <utility/vectorL.fwd.hh>#include <utility/vectorL.hh>#include <utility/vectorL_Selector.hh>#include <utility/vectorL_bool.hh>#include <utility/file/FileName.fwd.hh>#include <utility/file/FileName.hh>#include <utility/file/PathName.fwd.hh>#include <utility/file/PathName.hh>#include <utility/keys/AutoKey.fwd.hh>#include <utility/keys/AutoKey.hh>#include <utility/keys/Key.fwd.hh>#include <utility/keys/Key.hh>#include <utility/keys/Key2Tuple.fwd.hh>#include <utility/keys/Key2Tuple.hh>#include <utility/keys/Key3Tuple.fwd.hh>#include <utility/keys/Key3Tuple.hh>#include <utility/keys/Key4Tuple.fwd.hh>#include <utility/keys/Key4Tuple.hh>#include <utility/keys/KeyLess.fwd.hh>#include <utility/keys/KeyLookup.fwd.hh>#include <utility/keys/KeyLookup.hh>#include <utility/keys/NoClient.fwd.hh>#include <utility/keys/NoClient.hh>#include <utility/keys/SmallKeyVector.fwd.hh>#include <utility/keys/SmallKeyVector.hh>#include <utility/keys/UserKey.fwd.hh>#include <utility/keys/VariantKey.fwd.hh>#include <utility/keys/VariantKey.hh>#include <utility/options/AnyOption.fwd.hh>#include <utility/options/AnyOption.hh>#include <utility/options/AnyVectorOption.fwd.hh>#include <utility/options/AnyVectorOption.hh>#include <utility/options/BooleanOption.fwd.hh>#include <utility/options/BooleanOption.hh>#include <utility/options/BooleanVectorOption.fwd.hh>#include <utility/options/BooleanVectorOption.hh>#include <utility/options/FileOption.fwd.hh>#include <utility/options/FileOption.hh>#include <utility/options/FileVectorOption.fwd.hh>#include <utility/options/FileVectorOption.hh>#include <utility/options/IntegerOption.fwd.hh>#include <utility/options/IntegerOption.hh>#include <utility/options/IntegerVectorOption.fwd.hh>#include <utility/options/IntegerVectorOption.hh>#include <utility/options/Option.fwd.hh>#include <utility/options/Option.hh>#include <utility/options/OptionCollection.fwd.hh>#include <utility/options/OptionCollection.hh>#include <utility/options/PathOption.fwd.hh>#include <utility/options/PathOption.hh>#include <utility/options/PathVectorOption.fwd.hh>#include <utility/options/PathVectorOption.hh>#include <utility/options/RealOption.fwd.hh>#include <utility/options/RealOption.hh>#include <utility/options/RealVectorOption.fwd.hh>#include <utility/options/RealVectorOption.hh>#include <utility/options/ScalarOption.fwd.hh>#include <utility/options/ScalarOption.hh>#include <utility/options/ScalarOption_T_.fwd.hh>#include <utility/options/ScalarOption_T_.hh>#include <utility/options/StringOption.fwd.hh>#include <utility/options/StringOption.hh>#include <utility/options/StringVectorOption.fwd.hh>#include <utility/options/StringVectorOption.hh>#include <utility/options/VariantOption.fwd.hh>#include <utility/options/VariantOption.hh>#include <utility/options/VectorOption.fwd.hh>#include <utility/options/VectorOption.hh>#include <utility/options/VectorOption_T_.fwd.hh>#include <utility/options/VectorOption_T_.hh>#include <utility/options/mpi_stderr.hh>#include <utility/options/keys/AnyOptionKey.fwd.hh>#include <utility/options/keys/AnyOptionKey.hh>#include <utility/options/keys/AnyVectorOptionKey.fwd.hh>#include <utility/options/keys/AnyVectorOptionKey.hh>#include <utility/options/keys/BooleanOptionKey.fwd.hh>#include <utility/options/keys/BooleanOptionKey.hh>#include <utility/options/keys/BooleanVectorOptionKey.fwd.hh>#include <utility/options/keys/BooleanVectorOptionKey.hh>#include <utility/options/keys/FileOptionKey.fwd.hh>#include <utility/options/keys/FileOptionKey.hh>#include <utility/options/keys/FileVectorOptionKey.fwd.hh>#include <utility/options/keys/FileVectorOptionKey.hh>#include <utility/options/keys/IntegerOptionKey.fwd.hh>#include <utility/options/keys/IntegerOptionKey.hh>#include <utility/options/keys/IntegerVectorOptionKey.fwd.hh>#include <utility/options/keys/IntegerVectorOptionKey.hh>#include <utility/options/keys/OptionKey.fwd.hh>#include <utility/options/keys/OptionKey.hh>#include <utility/options/keys/OptionKeys.hh>#include <utility/options/keys/PathOptionKey.fwd.hh>#include <utility/options/keys/PathOptionKey.hh>#include <utility/options/keys/PathVectorOptionKey.fwd.hh>#include <utility/options/keys/PathVectorOptionKey.hh>#include <utility/options/keys/RealOptionKey.fwd.hh>#include <utility/options/keys/RealOptionKey.hh>#include <utility/options/keys/RealVectorOptionKey.fwd.hh>#include <utility/options/keys/RealVectorOptionKey.hh>#include <utility/options/keys/ScalarOptionKey.fwd.hh>#include <utility/options/keys/ScalarOptionKey.hh>#include <utility/options/keys/StringOptionKey.fwd.hh>#include <utility/options/keys/StringOptionKey.hh>#include <utility/options/keys/StringVectorOptionKey.fwd.hh>#include <utility/options/keys/StringVectorOptionKey.hh>#include <utility/options/keys/VectorOptionKey.fwd.hh>#include <utility/options/keys/VectorOptionKey.hh>#include <utility/options/keys/all.hh>#include <utility/pointer/ReferenceCount.fwd.hh>#include <utility/pointer/ReferenceCount.hh>#include <utility/pointer/access_ptr.fwd.hh>#include <utility/pointer/access_ptr.hh>#include <utility/pointer/owning_ptr.functions.hh>#include <utility/pointer/owning_ptr.fwd.hh>#include <utility/pointer/owning_ptr.hh>#include <utility/signals/BufferedSignalHub.fwd.hh>#include <utility/signals/BufferedSignalHub.hh>#include <utility/signals/Link.fwd.hh>#include <utility/signals/Link.hh>#include <utility/signals/LinkUnit.fwd.hh>#include <utility/signals/LinkUnit.hh>#include <utility/signals/PausableSignalHub.fwd.hh>#include <utility/signals/PausableSignalHub.hh>#include <utility/signals/SignalHub.fwd.hh>#include <utility/signals/SignalHub.hh>#include <numeric/NumericTraits.hh>#include <numeric/constants.hh>#include <numeric/conversions.hh>#include <numeric/numeric.functions.hh>#include <numeric/sphericalVector.fwd.hh>#include <numeric/sphericalVector.hh>#include <numeric/trig.functions.hh>#include <numeric/types.hh>#include <numeric/xyz.functions.fwd.hh>#include <numeric/xyz.functions.hh>#include <numeric/xyzMatrix.fwd.hh>#include <numeric/xyzMatrix.hh>#include <numeric/xyzTriple.fwd.hh>#include <numeric/xyzTriple.hh>#include <numeric/xyzVector.fwd.hh>#include <numeric/xyzVector.hh>#include <numeric/internal/ColPointers.hh>#include <numeric/internal/ColVectors.hh>#include <numeric/internal/ColsPointer.hh>#include <numeric/internal/RowPointers.hh>#include <numeric/internal/RowVectors.hh>#include <numeric/internal/RowsPointer.hh>#include <ObjexxFCL/Dimension.fwd.hh>#include <ObjexxFCL/Dimension.hh>#include <ObjexxFCL/DimensionExpression.hh>#include <ObjexxFCL/DynamicIndexRange.fwd.hh>#include <ObjexxFCL/DynamicIndexRange.hh>#include <ObjexxFCL/FArray.all.fwd.hh>#include <ObjexxFCL/FArray.fwd.hh>#include <ObjexxFCL/FArray.hh>#include <ObjexxFCL/FArray1.all.fwd.hh>#include <ObjexxFCL/FArray1.fwd.hh>#include <ObjexxFCL/FArray1.hh>#include <ObjexxFCL/FArray1A.fwd.hh>#include <ObjexxFCL/FArray1D.fwd.hh>#include <ObjexxFCL/FArray1D.hh>#include <ObjexxFCL/FArray1P.fwd.hh>#include <ObjexxFCL/FArray2.all.fwd.hh>#include <ObjexxFCL/FArray2.fwd.hh>#include <ObjexxFCL/FArray2.hh>#include <ObjexxFCL/FArray2A.fwd.hh>#include <ObjexxFCL/FArray2D.fwd.hh>#include <ObjexxFCL/FArray2D.hh>#include <ObjexxFCL/FArray2P.fwd.hh>#include <ObjexxFCL/FArray3.all.fwd.hh>#include <ObjexxFCL/FArray3.fwd.hh>#include <ObjexxFCL/FArray3.hh>#include <ObjexxFCL/FArray3A.fwd.hh>#include <ObjexxFCL/FArray3D.fwd.hh>#include <ObjexxFCL/FArray3D.hh>#include <ObjexxFCL/FArray3P.fwd.hh>#include <ObjexxFCL/FArray4.all.fwd.hh>#include <ObjexxFCL/FArray4.fwd.hh>#include <ObjexxFCL/FArray4A.fwd.hh>#include <ObjexxFCL/FArray4D.fwd.hh>#include <ObjexxFCL/FArray4P.fwd.hh>#include <ObjexxFCL/FArray5.all.fwd.hh>#include <ObjexxFCL/FArray5.fwd.hh>#include <ObjexxFCL/FArray5A.fwd.hh>#include <ObjexxFCL/FArray5D.fwd.hh>#include <ObjexxFCL/FArray5P.fwd.hh>#include <ObjexxFCL/FArray6.all.fwd.hh>#include <ObjexxFCL/FArray6.fwd.hh>#include <ObjexxFCL/FArray6A.fwd.hh>#include <ObjexxFCL/FArray6D.fwd.hh>#include <ObjexxFCL/FArray6P.fwd.hh>#include <ObjexxFCL/FArrayInitializer.fwd.hh>#include <ObjexxFCL/FArrayInitializer.hh>#include <ObjexxFCL/FArraySection.fwd.hh>#include <ObjexxFCL/FArraySection.hh>#include <ObjexxFCL/FArrayTraits.fwd.hh>#include <ObjexxFCL/FArrayTraits.hh>#include <ObjexxFCL/IndexRange.fwd.hh>#include <ObjexxFCL/IndexRange.hh>#include <ObjexxFCL/InitializerSentinel.hh>#include <ObjexxFCL/KeyFArray1D.fwd.hh>#include <ObjexxFCL/KeyFArray2D.fwd.hh>#include <ObjexxFCL/KeyFArray3D.fwd.hh>#include <ObjexxFCL/KeyFArray4D.fwd.hh>#include <ObjexxFCL/KeyFArray5D.fwd.hh>#include <ObjexxFCL/KeyFArray6D.fwd.hh>#include <ObjexxFCL/Observer.fwd.hh>#include <ObjexxFCL/Observer.hh>#include <ObjexxFCL/ObserverMulti.hh>#include <ObjexxFCL/ObserverSingle.hh>#include <ObjexxFCL/ProxySentinel.hh>#include <ObjexxFCL/SetWrapper.fwd.hh>#include <ObjexxFCL/Star.fwd.hh>#include <ObjexxFCL/Star.hh>#include <ObjexxFCL/TypeTraits.hh>#include <ObjexxFCL/char.functions.hh>#include <ObjexxFCL/proxy_const_assert.hh>#include <ObjexxFCL/string.functions.hh>#include <algorithm>#include <cassert>#include <cmath>#include <cstddef>#include <cstdio>#include <cstdlib>#include <iomanip>#include <iosfwd>#include <iostream>#include <limits>#include <list>#include <map>#include <ostream>#include <set>#include <sstream>#include <string>#include <time.h>#include <typeinfo>#include <utility>#include <vector>#include <basic/MetricValue.fwd.hh>#include <basic/datacache/BasicDataCache.fwd.hh>#include <basic/datacache/BasicDataCache.hh>#include <basic/datacache/CacheableData.fwd.hh>#include <basic/datacache/CacheableData.hh>#include <basic/datacache/DataCache.fwd.hh>#include <basic/datacache/DataCache.hh>#include <basic/options/keys/OptionKeys.hh>#include <basic/options/keys/run.OptionKeys.gen.hh>#include <basic/options/keys/score.OptionKeys.gen.hh>#include <basic/options/option.hh>#include <boost/algorithm/string/erase.hpp>#include <boost/bind.hpp>#include <boost/function.hpp>#include <boost/functional/hash.hpp>#include <boost/unordered_map.hpp>#include <core/pose/util.tmpl.hh>Go to the source code of this file.
Namespaces | |
| core | |
| A class for defining atom parameters, known as atom_types. | |
| core::scoring | |
Constant Groups | |
| core | |
| A class for defining atom parameters, known as atom_types. | |
| core::scoring | |
Definition in file NeighborList.tmpl.hh.
1.8.4